Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040651 [exp] 367 / 4e-127 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G154900 [exp] 243 / 2e-78 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10018257 pacid=23179375 polypeptide=Lus10018257 locus=Lus10018257.g ID=Lus10018257.BGIv1.0 annot-version=v1.0 ATGGACTCCGGAGTGTTCTTGGTCTCCGATTTGCACACCGATTATAAGGAGAACATGACATGGGTCAAGTGCTTGCCGACCAAAAAGCATCGGAAGGACA TTCTTATCGTGGCCGGCGATGTAGCCGAGACTTACAAGAACTTCTATTTGACTATGGCGCTTTTGAAGGAGAAATTCGAGCATGTTTTCTTTGTCCCTGG GAATCATGATCTCTGGTGTCGCAAAGAAGAGGATTCTCTTGATTCTCTTGAAAAGCTGAATAAGTTGCTTGGTGCTTGTAGAGGGCTTGGAGTGGAGACA CATCCTTTGTTGATCAATGGGCTTGGGATCATTCCTTTGTTCTCCTGGTATCATGAGAGTTTTGACAGAGAGACTGACATAACTAAGTTCAGAATTCCGC CCCTGGAGATGGTGATTTACTTTCTTTTCTCCTACTTTATAGGAGTTCTAAGTAACAAAATCGATTCACTTTACTTGCGAACTAGTAATGGCCCTTACGC AGAGGAACTCTCGATCAGAGACGACTCTCTGGCTCTACATTTTGATGCAATGAACAAAGGAAATGAGGAGAAAATCAAGCTGATCCAGAGCACTTGTAGC CAGATCATCACATTCTCTCACTTCCTCCCCAGGCAAGAGCTATGTCCAGAGAAGAGAATGAGGTTCAGGCGCCATTGGCTTACCCAAGAGAAAGAGAAAG GAGGTGAACGGAGGCGACAACTGGCTGCCGTTTTGCGTATATTCCGACGGGGAATTTCCGACAAGATTTCACCTTGTTTTTGGTCGGATTACTACGCTGC CAACCCAAGAACACCTCATGACACCCAACTTGCTCCTTGGGTTGCCAGGTTCTATAAACAAAGCATTAGATAG
AA sequence Show only first row Show all	>Lus10018257 pacid=23179375 polypeptide=Lus10018257 locus=Lus10018257.g ID=Lus10018257.BGIv1.0 annot-version=v1.0 MDSGVFLVSDLHTDYKENMTWVKCLPTKKHRKDILIVAGDVAETYKNFYLTMALLKEKFEHVFFVPGNHDLWCRKEEDSLDSLEKLNKLLGACRGLGVET HPLLINGLGIIPLFSWYHESFDRETDITKFRIPPLEMVIYFLFSYFIGVLSNKIDSLYLRTSNGPYAEELSIRDDSLALHFDAMNKGNEEKIKLIQSTCS QIITFSHFLPRQELCPEKRMRFRRHWLTQEKEKGGERRRQLAAVLRIFRRGISDKISPCFWSDYYAANPRTPHDTQLAPWVARFYKQSIR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018257 [exp]	0	1
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10021253 [exp]	6.9	0.8886
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10006490 [exp]	14.1	0.8600
AT1G69550			disease resistance protein (TI...		Lus10038482 [exp]	16.6	0.8341
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	22.2	0.8638
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10001973 [exp]	25.1	0.8597
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10041216 [exp]	27.0	0.8583
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10027600 [exp]	33.3	0.8532
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10036123 [exp]	34.5	0.8530
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10004250 [exp]	34.5	0.8336
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10008685 [exp]	37.1	0.8138

Compare expression of checked genes

Lus10018257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.