Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08370 516 / 0 ATAGAL2 alpha-galactosidase 2 (.1.2) AT5G08380 485 / 5e-172 ATAGAL1 alpha-galactosidase 1 (.1) AT3G56310 432 / 2e-150 Melibiase family protein (.1.2) AT3G26380 88 / 1e-18 Melibiase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024401 [exp] 545 / 0 AT5G08370 587 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038325 [exp] 529 / 0 AT5G08370 558 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018260 [exp] 492 / 1e-174 AT5G08370 539 / 0.0 alpha-galactosidase 2 (.1.2) Lus10036176 [exp] 465 / 2e-164 AT5G08370 521 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038305 [exp] 457 / 5e-161 AT5G08370 490 / 1e-173 alpha-galactosidase 2 (.1.2) Lus10010160 [exp] 442 / 8e-155 AT5G08380 581 / 0.0 alpha-galactosidase 1 (.1) Lus10029046 [exp] 441 / 3e-154 AT3G56310 650 / 0.0 Melibiase family protein (.1.2) Lus10034218 [exp] 437 / 7e-152 AT3G56310 646 / 0.0 Melibiase family protein (.1.2) Lus10017365 [exp] 363 / 1e-123 AT5G08380 501 / 9e-178 alpha-galactosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G152200 [exp] 558 / 0 AT5G08370 603 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G118200 [exp] 525 / 0 AT5G08370 598 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G255200 [exp] 487 / 2e-172 AT5G08380 667 / 0.0 alpha-galactosidase 1 (.1) Potri.004G038100 [exp] 461 / 1e-162 AT5G08370 522 / 0.0 alpha-galactosidase 2 (.1.2) Potri.019G056700 [exp] 437 / 2e-152 AT3G56310 681 / 0.0 Melibiase family protein (.1.2) Potri.008G185300 [exp] 85 / 8e-18 AT3G26380 830 / 0.0 Melibiase family protein (.1) Potri.010G048400 [exp] 84 / 2e-17 AT3G26380 772 / 0.0 Melibiase family protein (.1) Potri.010G048300 [exp] 77 / 4e-15 AT3G26380 815 / 0.0 Melibiase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF02065 [flax] [poplar] Melibiase Melibiase
Representative CDS sequence Show only first row Show all	>Lus10018258 pacid=23179311 polypeptide=Lus10018258 locus=Lus10018258.g ID=Lus10018258.BGIv1.0 annot-version=v1.0 ATGAGGAGGAACCTTATTTCCAATGGTCTTGGTCTCACACCACCCATGGGATGGAATAGTTGGAATCATTTTCACTGTAATATTGAAGAGCGGTTGATCA AGGAAACGGCTGATGCCATGGTTTCATCCGGACTTGCAGAGCTAGGCTATCACTACATAAACTTGGATGATTGTTGGGCTGAACTTGACAGAGACCCTCA GGGGAATATGGTTCCTAAAGCTTCAACTTTTCCTTCTGGAATCAAGGGTTTGGCTGACTATGTTCACTCCAAAGGTCTCAAGCTTGGGATTTACTCTGAT GCAGGGAACCAGACATGCAGCAAGAAAATGCCGGGATCATTAGGCCACGAAGAACAAGATGCCAAAACCTTTGCTTCCTGGGAGATCGACTATTTGAAAT ATGACAATTGTAATGATGATGGTACAAGCCCAACAGTCAGGTATCCAGTAATGAGCAAAGCACTGATAAATACAGAGAGACCAATCTTCTTCTCTATGTG TGAATGGGGTGTAGAAGACCCTGCAACCTGGGCCAGCACCATAGGAAACAGTTGGAGGACAACTGGTGACATCAATGATACCTGGGAAAAAATGCTGAAG GGGGCTGATAAGAATGATGAATGGGCATCTTATGCCGGACCGGGTGGCTGGAATGACCCAGACATGCTTGAAGTTGGGAATGGAGGGATGAGTACAGAGG AATACAGGTCACATTTCAGCATATGGGCACTCGCCAAGGCTCCTTTACTTATCGGGTGCGACATTCGGTCCATGACGAATGAGACCTACTCCATTCTAAG CAACACGGAAGTGATTGCAGTAAACCAAGATCAACTTGGCGTGCAGGGGAAGAAGGTTAAGAAAGATGGAGACTTGGAGGTGTGGGCTGGTCCACTGAGC AATAAGAAAGTGGCAGTTGTGCTTTGGAACAGAAGTCCTGTGCAGGCAAATGTTACTGCAGAATGGTCCGACATCGGTCTCCATTCGTCCGCTATCGTGG ACGCCAGAGATTTATGGACGGATTCAGACCAGAAAAGTCTGATGATTAAGGTTGTTGTGTCTGCAGAAATGGACTTTTCAATCTGTGAGTGGATCAATCT CAGCAGAGTTGGAGTCTCATGCATGTAA
AA sequence Show only first row Show all	>Lus10018258 pacid=23179311 polypeptide=Lus10018258 locus=Lus10018258.g ID=Lus10018258.BGIv1.0 annot-version=v1.0 MRRNLISNGLGLTPPMGWNSWNHFHCNIEERLIKETADAMVSSGLAELGYHYINLDDCWAELDRDPQGNMVPKASTFPSGIKGLADYVHSKGLKLGIYSD AGNQTCSKKMPGSLGHEEQDAKTFASWEIDYLKYDNCNDDGTSPTVRYPVMSKALINTERPIFFSMCEWGVEDPATWASTIGNSWRTTGDINDTWEKMLK GADKNDEWASYAGPGGWNDPDMLEVGNGGMSTEEYRSHFSIWALAKAPLLIGCDIRSMTNETYSILSNTEVIAVNQDQLGVQGKKVKKDGDLEVWAGPLS NKKVAVVLWNRSPVQANVTAEWSDIGLHSSAIVDARDLWTDSDQKSLMIKVVVSAEMDFSICEWINLSRVGVSCM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10018258 [exp]	0	1
					Lus10011438 [exp]	1.0	0.8698
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023036 [exp]	4.9	0.7507
AT1G06340			Plant Tudor-like protein (.1)		Lus10039027 [exp]	6.0	0.7507
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10018718 [exp]	6.9	0.7507
AT2G15220			Plant basic secretory protein ...		Lus10026585 [exp]	7.4	0.6939
AT2G44220			Protein of Unknown Function (D...		Lus10006862 [exp]	7.7	0.7507
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10026169 [exp]	8.5	0.7507
AT4G25190		QWRF7	QWRF domain containing 7, Fami...		Lus10009604 [exp]	9.5	0.6887
AT4G25950		VATG3	vacuolar ATP synthase G3 (.1)		Lus10009452 [exp]	12.6	0.6793
AT4G26466		LRE	lorelei (.1)		Lus10011066 [exp]	16.0	0.6784

Compare expression of checked genes

Lus10018258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.