Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23820 348 / 8e-120 SPDS1 spermidine synthase 1 (.1.2) AT1G70310 334 / 1e-114 SPDS2 spermidine synthase 2 (.1) AT5G53120 307 / 9e-104 SPMS, SPDS3, ATSPDS3 spermidine synthase 3 (.1.2.3.4.5.6) AT5G19530 95 / 3e-22 ACL5 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029169 [exp] 348 / 6e-120 AT1G23820 562 / 0.0 spermidine synthase 1 (.1.2) Lus10030629 [exp] 336 / 7e-116 AT1G70310 531 / 0.0 spermidine synthase 2 (.1) Lus10039416 [exp] 336 / 1e-115 AT1G23820 509 / 0.0 spermidine synthase 1 (.1.2) Lus10012996 [exp] 333 / 8e-114 AT1G23820 537 / 0.0 spermidine synthase 1 (.1.2) Lus10019016 [exp] 327 / 1e-111 AT5G53120 571 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Lus10030861 [exp] 325 / 4e-111 AT1G23820 514 / 0.0 spermidine synthase 1 (.1.2) Lus10003398 [exp] 321 / 5e-109 AT5G53120 563 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Lus10040649 [exp] 251 / 2e-83 AT1G23820 139 / 2e-39 spermidine synthase 1 (.1.2) Lus10010538 [exp] 94 / 6e-22 AT5G19530 439 / 1e-155 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094600 [exp] 355 / 6e-123 AT1G70310 538 / 0.0 spermidine synthase 2 (.1) Potri.008G147200 [exp] 353 / 2e-122 AT1G70310 532 / 0.0 spermidine synthase 2 (.1) Potri.012G002600 [exp] 323 / 6e-110 AT5G53120 582 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.015G018900 [exp] 313 / 5e-106 AT5G53120 545 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.010G089200 [exp] 89 / 8e-20 AT5G19530 447 / 2e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.006G222200 [exp] 86 / 5e-19 AT5G19530 533 / 0.0 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G151800 [exp] 85 / 1e-18 AT5G19530 445 / 7e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01564 [flax] [poplar] Spermine_synth Spermine/spermidine synthase domain
Representative CDS sequence Show only first row Show all	>Lus10018259 pacid=23179261 polypeptide=Lus10018259 locus=Lus10018259.g ID=Lus10018259.BGIv1.0 annot-version=v1.0 ATGGCCGAAACTGCTGTTGATCAAAATGGCGATTCAACCCCAAAGCTTCCTGGTTGGTTCGTTGATGTCGAGCAAGGATGGCCAGGAGAAGCTATTAGCT TTAAGGTGGAGAAGGTTCTGTTCCAAGGCAAATCTAAGTACCAAGAAATATTTGTCTTTGAGTCATTATCGTATGGGAAGGTTGTAATGGTGGATGGTTC TCTTCAACTTACTGAGAAGGACGAGTTTGCATACCAAGAAATGATGACTCATCTCCCGCTTTGCTCCATCCCCAACCCTAAGAAGGTGTTGTTGATCGGA GGTGGAGATGGCGGCATTCTTAGGGAAATTTCACGTCATTCGTCGGTGGAGACGATTGATATATGTGAGATGGATCAACTTATTATTGATGTTTACAGGC GTTTCTTTCCAGAAATAGCAATCGGATACTCTGATCCACGAGTAAACGTGCATTTAGGAGATGGAGTTGAATTCATGAAAGGTGTCCCTGCTGGCACATA TGACGCTATCATATTGGACGCATTTGTCGCCATGGGGCCTGATGGGAAGTACGTAGAAGATGAATCGTTTCTGCAATCAGTGGCGAAATCGCTGAGGCCC GGAGGAGTATTGTGTTCGCCGGCGGAGAGCCTGTGGCGGAAAGGGTTTTCAGTAGAGGAGACAGTTGCCAAATGTCGCAAATCCTTCAAGGGCTCTGTTA ACTATGCTTGGGCCTCTGTCCCCAGGTATATGCTTTGCTCGACGGAAGGACCGCCGGTCGACTTCCGGAACCCTATTAATCCTCTCGATCCTCAAAATCT TGGTGTGGCCAAAAAACCCCCAAGGTTTTACAACTCGGAGGTACATTCAGCTGCATTCTGTTTGCCACCATTTGCCAAGGGAAATTGA
AA sequence Show only first row Show all	>Lus10018259 pacid=23179261 polypeptide=Lus10018259 locus=Lus10018259.g ID=Lus10018259.BGIv1.0 annot-version=v1.0 MAETAVDQNGDSTPKLPGWFVDVEQGWPGEAISFKVEKVLFQGKSKYQEIFVFESLSYGKVVMVDGSLQLTEKDEFAYQEMMTHLPLCSIPNPKKVLLIG GGDGGILREISRHSSVETIDICEMDQLIIDVYRRFFPEIAIGYSDPRVNVHLGDGVEFMKGVPAGTYDAIILDAFVAMGPDGKYVEDESFLQSVAKSLRP GGVLCSPAESLWRKGFSVEETVAKCRKSFKGSVNYAWASVPRYMLCSTEGPPVDFRNPINPLDPQNLGVAKKPPRFYNSEVHSAAFCLPPFAKGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10018259 [exp]	0	1

Compare expression of checked genes

Lus10018259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.