Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25140 338 / 2e-110 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT5G25120 321 / 6e-104 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT5G25180 319 / 3e-103 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT5G25130 318 / 4e-103 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1) AT1G13080 318 / 5e-103 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT1G11610 313 / 5e-101 CYP71A18 "cytochrome P450, family 71, subfamily A, polypeptide 18", cytochrome P450, family 71, subfamily A, polypeptide 18 (.1.2) AT3G48280 311 / 3e-100 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G26300 309 / 2e-99 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26320 308 / 8e-99 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT4G13310 307 / 8e-99 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026252 [exp] 570 / 0 AT5G25120 383 / 2e-123 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10002885 [exp] 525 / 0 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10042419 [exp] 503 / 3e-176 AT3G48280 343 / 3e-114 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10030708 [exp] 486 / 4e-168 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10012767 [exp] 459 / 8e-158 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10013194 [exp] 456 / 1e-156 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10027427 [exp] 446 / 7e-155 AT3G26270 266 / 4e-85 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) Lus10028926 [exp] 436 / 8e-148 AT3G26330 382 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10009903 [exp] 425 / 3e-144 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 426 / 8e-145 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 423 / 8e-144 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.001G365100 [exp] 422 / 2e-143 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 421 / 1e-142 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 416 / 5e-141 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 415 / 1e-140 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 410 / 1e-138 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 409 / 3e-138 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 406 / 4e-137 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365300 [exp] 368 / 4e-123 AT3G26300 291 / 7e-94 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10018263 pacid=23179374 polypeptide=Lus10018263 locus=Lus10018263.g ID=Lus10018263.BGIv1.0 annot-version=v1.0 ATGGAAATTTCCCTTCACCAGCTCATTTCTTCATCCTCCTCCTTAACCTCTGCCTTTCTCTTCACTTCCACAATCACCCTTCTCGCTCTATTCCTCATCC TGAAGAAGAATCACCCGTCGTCCAACAAAGGCGCCACCTCGAAACAGTCGCCGCCTGGGCCATGGAAGCTCCCAATAATAGGAAACCTTCACCAACTCAT CGGCGACGATCCTCACCGTAGACTAAAACACCTAGCACAAAAGTACGGTCCAGATCTGATGCAGATCCACCTCGGTGAGGTCCCGGTCGTCGTAGTTTCC TCCCCTGAAGCTGCAAAACAGGTCATGAAAATCCACGACCTGGCTTTCGCTTCCAGGCCAAGCGATCTCTTAGCGGGCAACATCATCTACGACGGCGGCA AGAACATCGCCCTAGCTCCGTACGGAGAGTACTGGCGGCAGATGCGGAAGATCGCCGTCCTGGAGCTCCTCAGCGCGAAACGAGTCGCTTCGTTCCGTCG AATCAGGGAGGAAGAGGTCAACGGTTTTGTTGACCGCCTTGCTGGTAAAGCAGGGGAGGTTGTGGATCTGAGTGGGACGGTGGAGGAATTGGCGAGCTCG GTGACTTCGAGGGCGGCGTTCGGGAACGTGCAGGAGTTGAGCGATGAGTTCATGATGGTGGTTCATAAAATTTCGGCTGCCTTTTCAGGGTTTCAAGTAT CGGATTTGTATCCTTCTCTGAAATTTCTGCCTGTCCTCACCGGGTTTAAGGCTAAGCTGGAGAGGATGCGTAAAGCGTCGGATTCGATATTGGATAAAAT TATTGATGAACATCAATCCAAGAGAGAAAGAAGAAGTGGGAAACTCAATGAAGAAGATGATGATGTTGATCTTATGGATATTCTTCTGGATATTCAGGAA GATCATAGTCTTGGTGTTCCTGTAACGGCTCAAGTCATAAAAGCAGTCACTCTGGAACTGTTCCTGGCTGGAATTGACACATCATCATCGACAATTTTGT GGACTATGTCAGAAATTGTCAAAAATCCAAATGTGATGCAAACATGCCAACAAGAAGTGAGAGAGGTGTTTGGCAAGATCGGAAATGTTGAGGAGGCAAG TCTTCATAAGTTAAACTACTTGGACATGGTGATCGCAGAAGCTTTAAGGTTGCATCCTCCCGTTCCTTTACTCGTTCCCAGGGAAACAAGAGAGGACGTG AAGCTTGATAATGGATACGAGGTGCCGATGAAAACCAAAGTATTTGTGAATGTTTGGGCGATCAATCGAGATTCTCGTCATTGGACTGATGCAGAAAGGT TTCATCCTGAAAGATTTACGGATTGTTCGGCTGATTTTAAAGGGAATGATTTTCACTTCATTCCATTCGGTGCTGGCAGAAGAATATGTCCTGGAATGAC GTTCGGAATGGCGATCGTTAAACTTACTTTGGCAAATATGCTCTTCCATTTCGATTGGGCACATTCTAGAGGAATGGAATCAGAAAATGTTGATATGGCG GAATCCTTTGGAGTAATACTTTCGAGAAAATATCCTTTGCGGTTAGTTCCTTCTCCCTACATCGACTTTAAGGAAAATTGA
AA sequence Show only first row Show all	>Lus10018263 pacid=23179374 polypeptide=Lus10018263 locus=Lus10018263.g ID=Lus10018263.BGIv1.0 annot-version=v1.0 MEISLHQLISSSSSLTSAFLFTSTITLLALFLILKKNHPSSNKGATSKQSPPGPWKLPIIGNLHQLIGDDPHRRLKHLAQKYGPDLMQIHLGEVPVVVVS SPEAAKQVMKIHDLAFASRPSDLLAGNIIYDGGKNIALAPYGEYWRQMRKIAVLELLSAKRVASFRRIREEEVNGFVDRLAGKAGEVVDLSGTVEELASS VTSRAAFGNVQELSDEFMMVVHKISAAFSGFQVSDLYPSLKFLPVLTGFKAKLERMRKASDSILDKIIDEHQSKRERRSGKLNEEDDDVDLMDILLDIQE DHSLGVPVTAQVIKAVTLELFLAGIDTSSSTILWTMSEIVKNPNVMQTCQQEVREVFGKIGNVEEASLHKLNYLDMVIAEALRLHPPVPLLVPRETREDV KLDNGYEVPMKTKVFVNVWAINRDSRHWTDAERFHPERFTDCSADFKGNDFHFIPFGAGRRICPGMTFGMAIVKLTLANMLFHFDWAHSRGMESENVDMA ESFGVILSRKYPLRLVPSPYIDFKEN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10018263 [exp]	0	1
AT2G18150			Peroxidase superfamily protein...		Lus10028337 [exp]	1.0	0.9695
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028897 [exp]	3.0	0.9584
AT5G49960			unknown protein		Lus10013455 [exp]	4.2	0.9470
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10007513 [exp]	4.9	0.9598
AT1G68710			ATPase E1-E2 type family prote...		Lus10035068 [exp]	4.9	0.9564
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10015921 [exp]	7.1	0.9392
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	8.5	0.9463
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10001316 [exp]	8.5	0.9410
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034668 [exp]	8.8	0.9344
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001108 [exp]	9.2	0.9402

Compare expression of checked genes

Lus10018263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.