Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12770 162 / 9e-45 MEF22 mitochondrial editing factor 22 (.1) AT4G35130 142 / 3e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G05240 136 / 1e-35 MEF19 mitochondrial editing factor 19 (.1) AT3G11460 135 / 2e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G15510 136 / 3e-35 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 135 / 3e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33760 134 / 6e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 134 / 9e-35 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 128 / 6e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G11290 128 / 1e-32 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040648 [exp] 564 / 0 AT4G18750 376 / 1e-119 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024876 [exp] 155 / 1e-41 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10033858 [exp] 150 / 1e-40 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014211 [exp] 150 / 2e-40 AT3G11460 791 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022702 [exp] 145 / 3e-39 AT3G11460 641 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037362 [exp] 145 / 2e-38 AT3G57430 477 / 9e-158 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000706 [exp] 141 / 4e-37 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10031028 [exp] 139 / 2e-36 AT4G19191 727 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 137 / 2e-35 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G152300 [exp] 300 / 4e-96 AT4G33990 489 / 1e-162 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 149 / 6e-40 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G211400 [exp] 147 / 2e-39 AT3G11460 772 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G152000 [exp] 146 / 8e-39 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.012G108000 [exp] 145 / 1e-38 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.012G111900 [exp] 144 / 2e-38 AT4G33990 518 / 1e-173 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 143 / 6e-38 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 140 / 8e-37 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G086200 [exp] 139 / 2e-36 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 138 / 4e-36 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10018264 pacid=23179347 polypeptide=Lus10018264 locus=Lus10018264.g ID=Lus10018264.BGIv1.0 annot-version=v1.0 ATGAGTAACAAGTTGTTGTCTATACTCAACTCCAGAAGGCCATCACTGTATCTCTGGAATTTGAAAATACGAGACGCTGCAAATCGCCGCCTCTTCAACC AAACTTTTCAACTCTACCGTTCCCTGTTGAGCTTCGGCATCCGCGGCGGCAGTAGCTTCACTTACCCATTACTCCTCAAATCCGCCGCCTCCTGCTCCAT CCCCGACGCATTCCATCTCGGTAAAACGATCCATTCCCACGTTCTGCATCTAGGTTTCCAGTCGGACGTGTACGTGCAGACATCACTCCTCGACATGTAC TCGAAATGTCGCGACTTGGTTTCTTCCCGCCAAGTGTTGGACGAAATGTCTGAAAGAAATGTTGTGTCTTGGAACTCCATGATCTCTGCCTATTGTAGTT GCTCTCTGTTTGACCAAGCCATTTCTTTGCTGAACGAAATGAGGGGTCTTGGTTTGGGACCAAATTCGACAACTTTCGTCGTGCTGCTTTCTCCTTGTGG AGGCTCTGGTTCACTTCTGCAGGGCCTTTCAGCTCAGTGCTGCGTCTTCAAGATGGGGCTTCTGGATTTAGACAATGTGCCATTAACTAACGCGGTGATG GGAATGCTCGTTAATCACGGACAGACTCGTGAAGCTCGTGCCATTCTCGACAAGATGCACGAGCCTTCTCTAATCTCTTGGACAACACTACTAAACGGTT ACGTAGAATCTGGCAACGTAACCGAAGCTTTCTCTGTATTCAATCAGACGAGAAGAAGAGAAAGCGTCGATTTCGTAGCTTTCCTCACCATGATCACTTG TTGTGGCCAACACGGTTACCTGTCGATATCCTCCTCGCTCCATTCGTTGATAATCAAAACCGGGTGTGACGAGGAGAACGCCATTGCTAATCTTCTTGTG AGCATGTATGCGAAATGTGGTGATCTTAGCTCAGCTCGACTTGTGTTTGATTTCACAGGAGAGAAAACTATCTCGGTATGGACATCAATAATGGCTGCAC TCTGA
AA sequence Show only first row Show all	>Lus10018264 pacid=23179347 polypeptide=Lus10018264 locus=Lus10018264.g ID=Lus10018264.BGIv1.0 annot-version=v1.0 MSNKLLSILNSRRPSLYLWNLKIRDAANRRLFNQTFQLYRSLLSFGIRGGSSFTYPLLLKSAASCSIPDAFHLGKTIHSHVLHLGFQSDVYVQTSLLDMY SKCRDLVSSRQVLDEMSERNVVSWNSMISAYCSCSLFDQAISLLNEMRGLGLGPNSTTFVVLLSPCGGSGSLLQGLSAQCCVFKMGLLDLDNVPLTNAVM GMLVNHGQTREARAILDKMHEPSLISWTTLLNGYVESGNVTEAFSVFNQTRRRESVDFVAFLTMITCCGQHGYLSISSSLHSLIIKTGCDEENAIANLLV SMYAKCGDLSSARLVFDFTGEKTISVWTSIMAAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12770		MEF22	mitochondrial editing factor ...		Lus10018264 [exp]	0	1
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10006209 [exp]	28.6	0.6123
AT4G02610			Aldolase-type TIM barrel famil...		Lus10024848 [exp]	29.5	0.5419
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10000806 [exp]	31.4	0.6032
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10012029 [exp]	31.4	0.5530
AT4G22840			Sodium Bile acid symporter fam...		Lus10028901 [exp]	49.8	0.6219
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10032401 [exp]	52.4	0.5690
AT1G17930			Aminotransferase-like, plant m...		Lus10033415 [exp]	54.7	0.5839
AT1G64870			unknown protein		Lus10002022 [exp]	59.5	0.5775
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Lus10012746 [exp]	71.6	0.6005
AT1G77010			Pentatricopeptide repeat (PPR)...		Lus10010146 [exp]	77.2	0.6013

Compare expression of checked genes

Lus10018264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.