Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16860 194 / 1e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39350 192 / 1e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G16835 187 / 5e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 189 / 6e-56 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 186 / 4e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18485 187 / 8e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 184 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 182 / 2e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 181 / 7e-54 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 182 / 2e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040648 [exp] 366 / 4e-125 AT4G18750 376 / 1e-119 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035788 [exp] 206 / 6e-62 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10037362 [exp] 203 / 1e-61 AT3G57430 477 / 9e-158 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028593 [exp] 190 / 1e-56 AT5G16860 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 188 / 7e-56 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018897 [exp] 190 / 8e-56 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006628 [exp] 181 / 1e-55 AT4G21065 399 / 7e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005987 [exp] 183 / 2e-55 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030225 [exp] 179 / 3e-55 AT5G08510 472 / 2e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G152300 [exp] 260 / 4e-83 AT4G33990 489 / 1e-162 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G237000 [exp] 195 / 4e-59 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G005700 [exp] 196 / 6e-59 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 190 / 1e-57 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 192 / 6e-57 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 192 / 8e-57 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G006400 [exp] 190 / 9e-57 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G005400 [exp] 189 / 1e-56 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 191 / 2e-56 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G048800 [exp] 190 / 2e-56 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10018265 pacid=23179272 polypeptide=Lus10018265 locus=Lus10018265.g ID=Lus10018265.BGIv1.0 annot-version=v1.0 ATGTTTAACAGCATATTGGTTAAGGACTTGACAGCTTGGAGCTCCATGATTAACGGATACGCGATTCACGGGATGGGAAATGAAGCTCTCGGTTTATTCC ACGAGATGCGAAAAGAAGGGATAGTGCCGGATAGTGTTACTTACACGAGTGTATTACTTGCGTGTAGTCATTCGGGACTCGTTGAGGATGGAGTGAATTA TTTTCTGAGCATGCAGAAGGATTTCGGAATTGAACCTGGGATAGAACACTATACCTGCTTGGTAGATCTTCTTGGGAGAGCTGGTCGGCTCGACTTGGCG ATGAAACCGACGTTGGAAATGCCCGGAGAGATTCAAGCGCGAATGTGGCCTTCGATTCTGAGTTCGTGCAGGAAATATCAAAATGTAGAGCTGGGCGAAT GTGCTGCTAAGAAGCTGTTAGAACTGAGTCCTGATCAGACTGGGAATTATGTTCTGATGGCTAATCTGTACATGTCAGAAGGTAAGTGGAAGGAGGCTGC CAAGATGAGAAGCTCGATGGATGGTCGAGGATTAGTAAAGAAACCTGCTTGGAGCCAGGTCGAGATTAATGGTTCGGTCAACGACTCCATTGCCAGAGTT GGATGA
AA sequence Show only first row Show all	>Lus10018265 pacid=23179272 polypeptide=Lus10018265 locus=Lus10018265.g ID=Lus10018265.BGIv1.0 annot-version=v1.0 MFNSILVKDLTAWSSMINGYAIHGMGNEALGLFHEMRKEGIVPDSVTYTSVLLACSHSGLVEDGVNYFLSMQKDFGIEPGIEHYTCLVDLLGRAGRLDLA MKPTLEMPGEIQARMWPSILSSCRKYQNVELGECAAKKLLELSPDQTGNYVLMANLYMSEGKWKEAAKMRSSMDGRGLVKKPAWSQVEINGSVNDSIARV G

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10018265 [exp]	0	1
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Lus10037484 [exp]	25.8	0.7733
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Lus10039719 [exp]	35.6	0.7715
AT1G30800			Fasciclin-like arabinogalactan...		Lus10038414 [exp]	35.9	0.7515
AT3G52420		ATOEP7	outer envelope membrane protei...		Lus10003733 [exp]	47.1	0.7519
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003454 [exp]	57.2	0.7395
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10016096 [exp]	58.0	0.7500
AT2G28085			SAUR-like auxin-responsive pro...		Lus10016129 [exp]	58.2	0.7429
					Lus10011950 [exp]	109.4	0.7129
					Lus10018536 [exp]	122.6	0.7134
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Lus10010281 [exp]	132.6	0.7142

Compare expression of checked genes

Lus10018265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.