Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17820 603 / 0 Putative integral membrane protein conserved region (DUF2404) (.1) AT1G73200 555 / 0 Putative integral membrane protein conserved region (DUF2404) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040647 [exp] 1176 / 0 AT1G17820 709 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1) Lus10038326 [exp] 860 / 0 AT1G17820 705 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1) Lus10036188 [exp] 845 / 0 AT1G17820 687 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G155000 [exp] 674 / 0 AT1G17820 692 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1) Potri.018G152400 [exp] 660 / 0 AT1G17820 686 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10296 [flax] [poplar] MMM1 Maintenance of mitochondrial morphology protein 1
Representative CDS sequence Show only first row Show all	>Lus10018266 pacid=23179336 polypeptide=Lus10018266 locus=Lus10018266.g ID=Lus10018266.BGIv1.0 annot-version=v1.0 ATGTGGCTGTCGCTCTTTTTCTTCCTTGGCTTCTTGCTTGGGGCGCTTGCTCTCGCTGCTTTCCAAGCTCTGGCCGCTTATGTCTTGCTGCTTCGACTCA AACATAAGGTTTCTCATCAGGCTGCCAGATTGGCCGACTCTACGGATTCTCAGAGAGACCTTGATCCCCGCCAGTCGCTCAAATACGCTCATGACAAGAA GGGAATGGTTTGGGTTCTTGAGCCGGATAAAGTTCCGAAAAATTGGCCGGGAGAAAAGGAGCAAAAGAAGAAGAAAGATATGTATGAGGTCGTCCCTGTT CGCAGATCAGCTAAAATCAGGGACCGATTCCTTATTCTGGTTGATTCAGATGGTACACATACAGCTGTTCCTTTGGTCGGTTGCCTTGTAGATGCTATTT CTGCTACTAGTATGCCTTCAAGAAAATGGGCCAAAAGGTATCCGATTAAAGTTCAAAGCAAGAGTTCCTTGATCTACAAGGGAAGTAGAACAGTTTACAT TTATCTTGAAACATCATGGGAGAAGGAGTCATGGTGTAAAGCCCTCCGTCTTGCCGCATGTGACGACAAACAGAAACTTTCATGGTTTCAGAAACTGTCA TGGTTTACCAAAGTGACTGAAGAGTTCCACTCTTATTTGATGTCCATGAATACAGGATATCCTGCGTTTATGAAACCCTCTACAGGGTGCAATGGAGAAA TCATAGATAGGATTAATAAGTTGGATGGTTCAACATCCAAGGGAAAGTCCCTACCATCTCTGAAGAAGACAGCTATCTATGAAGAAGACAGTCCGGCCTC ATCAGCAGTCTATTCTCGCTCCCAAAGCTATGCCTCTTCTGATGGAGAATATGATGACAGGTACAATGTAGATGATGGAACACTGTGCTGGAATTTGCTT ATTTCTCGCCTCTTCTTTGATATCAAAGGAAATCTGGAGACAAAGAATTCAGTGCAAGCACGGATTCAGAGAACATTGTCTAATATGAGAATCCCAACTT ACATCGGTGAAGTTATATGCACAAGCCTACACCTCGGGAACCTCCCTCCTTACATCCATGGAATTAGGGTCCATCCTGTGGACATGAGTGATGTTTGGAT GTGGGATGTTGATTTAGAATATTGTGGTGGAGTGGTACTGGATATCGAAACACGGCTGGAAGTTCGTGATCTAGATCTTCAAAAAGGTATTGGGGACACC AATGGAGAACCAAACTCAGGGGGGGTTATCCCTTCAGACCTGCTGGAAGGTTTCCAAAATTATGGGAAGCAGTTCAATCTTCCTGAGGGTAATGTTGACA CCCAAGAGCATAAAGAGGAAGGGGATCCTAAACTCGATGCGTCAAAAAGCATTTCAAGCAGTCTGCCACCTTCTACAAACATGTCGGAGTGGAAGACCAT TGTTAATTCAATTGCAAAACAGGTTTCACAGGTGCCACTTTCTCTGTCCATAAGGGTTTCTTCTCTCCGGGGAACATTGAGGTTCCACATAAAGCCACCT CCTTCTGATCAGCTATGGTTTGGTTTCACATCCATGCCTGATATAGAGTTTGAACTGGAATCTTCTGTTGGAGAACACAAGATTACTAGTGGGCATATTG CTTTGTTCCTCATCAATCGGTTCAAGAATTCGATCAAAGAAACTTTGGTACTTCCAAACTGCGAGAGTATGTGCATTCCGTGTATGTTGGCAGAAAAGAA CGATTGGGTTCCTCGAAAAGCTGCGCCTTTTATGTGGCTTAATCGAGAAGTAACCACTGACCATGCACCCACAGGCGAAGCTGTTAGTTCCCTTCCACCT AAACCAAAATCCAAGTCCGAAGAAAAAACGGGGACCTCCAGCAACAATAATAGTCCACCAGACAGCAATCATGGAGCTACTAATAGGAATGGTGGCGAAA ATCAACACGTGAAATCTGACTCCACAGATTCCTCGGCTAGCTCGGAGAAGTCACCAACAGAAACCAGTAAATCAGTGGAAGAGCTAAGAACTCCCTTGTT AGACCGCCGCGAATCACAAGACGACCACCACGAGCATAATGGGAACCATGTTTCTGAAAGCTCATTAACATCTAGGGCTCTAATAAATGTGGATAGGTTG ATAGAAGCTGTTGACGATTCAAAGAAATCAGGACGTAGGGCGAGGATGCTTGATCTGGGGAAGAAAATGAGTGAGAAGCTTGAAGAGAAGAGGCGCCATC TTGAAGAAAGGAGTAGAAGCTTTGTGGAGAAGATGAGAGATAAAGCTGAACATAAATGA
AA sequence Show only first row Show all	>Lus10018266 pacid=23179336 polypeptide=Lus10018266 locus=Lus10018266.g ID=Lus10018266.BGIv1.0 annot-version=v1.0 MWLSLFFFLGFLLGALALAAFQALAAYVLLLRLKHKVSHQAARLADSTDSQRDLDPRQSLKYAHDKKGMVWVLEPDKVPKNWPGEKEQKKKKDMYEVVPV RRSAKIRDRFLILVDSDGTHTAVPLVGCLVDAISATSMPSRKWAKRYPIKVQSKSSLIYKGSRTVYIYLETSWEKESWCKALRLAACDDKQKLSWFQKLS WFTKVTEEFHSYLMSMNTGYPAFMKPSTGCNGEIIDRINKLDGSTSKGKSLPSLKKTAIYEEDSPASSAVYSRSQSYASSDGEYDDRYNVDDGTLCWNLL ISRLFFDIKGNLETKNSVQARIQRTLSNMRIPTYIGEVICTSLHLGNLPPYIHGIRVHPVDMSDVWMWDVDLEYCGGVVLDIETRLEVRDLDLQKGIGDT NGEPNSGGVIPSDLLEGFQNYGKQFNLPEGNVDTQEHKEEGDPKLDASKSISSSLPPSTNMSEWKTIVNSIAKQVSQVPLSLSIRVSSLRGTLRFHIKPP PSDQLWFGFTSMPDIEFELESSVGEHKITSGHIALFLINRFKNSIKETLVLPNCESMCIPCMLAEKNDWVPRKAAPFMWLNREVTTDHAPTGEAVSSLPP KPKSKSEEKTGTSSNNNSPPDSNHGATNRNGGENQHVKSDSTDSSASSEKSPTETSKSVEELRTPLLDRRESQDDHHEHNGNHVSESSLTSRALINVDRL IEAVDDSKKSGRRARMLDLGKKMSEKLEEKRRHLEERSRSFVEKMRDKAEHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17820			Putative integral membrane pro...		Lus10018266 [exp]	0	1
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	1.7	0.8992
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10032887 [exp]	2.4	0.8824
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10038355 [exp]	2.4	0.8927
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10031419 [exp]	3.5	0.8479
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10027139 [exp]	4.0	0.8546
AT4G03340			Core-2/I-branching beta-1,6-N-...		Lus10031626 [exp]	5.3	0.8289
AT2G45670			calcineurin B subunit-related ...		Lus10009312 [exp]	5.5	0.8701
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10019537 [exp]	6.3	0.8510
AT1G17820			Putative integral membrane pro...		Lus10040647 [exp]	6.6	0.8779
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10033840 [exp]	8.8	0.8651

Compare expression of checked genes

Lus10018266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.