Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17840 851 / 0 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT3G21090 533 / 0 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 530 / 0 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 471 / 1e-160 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT2G28070 291 / 2e-90 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT2G01320 171 / 6e-46 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G55110 170 / 1e-45 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G55090 168 / 5e-45 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT3G55130 168 / 6e-45 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT5G19410 162 / 2e-43 ABCG23 ATP-binding cassette G23, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040644 [exp] 1013 / 0 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10009961 [exp] 472 / 6e-161 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027354 [exp] 471 / 3e-160 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009960 [exp] 466 / 1e-158 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 449 / 1e-151 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10023154 [exp] 433 / 2e-145 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10000339 [exp] 410 / 3e-137 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10031063 [exp] 409 / 2e-136 AT3G21090 659 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10035445 [exp] 413 / 6e-135 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G155300 [exp] 917 / 0 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 915 / 0 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G255800 [exp] 563 / 0 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051200 [exp] 559 / 0 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051300 [exp] 514 / 6e-177 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255900 [exp] 508 / 2e-174 AT3G21090 929 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.005G073100 [exp] 473 / 1e-160 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 471 / 7e-160 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G051300 [exp] 455 / 2e-154 AT1G17840 611 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G312300 [exp] 455 / 6e-154 AT1G17840 624 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10018268 pacid=23179361 polypeptide=Lus10018268 locus=Lus10018268.g ID=Lus10018268.BGIv1.0 annot-version=v1.0 ATGGGTCTGCAGGATTGTGCTGATACGGTGATTGGGAATTGGCATCTCCGAGGGATCAGCGGTGGTGAGAAGAGGAGAGTCAGCATTGCTCTCGAAATCC TTATGCGACCCAGATTGCTGTTTCTCGATGAACCCACCAGCGGGCTTGACAGTGCTTCTGCTTTCTTTGTAACGCAGACGTTACGTGGACTGTCGAGGGA CGGAAGGACTGTGATCGCTTCCATCCATCAACCCAGTAGTGAAGTGTTTGAGCTTTTTGATCGGCTTTACCTTCTTTCCGGCGGGAAGACTGTGTATTTC GGCCAGGCTTCGGACGCCTATGAGTTCTTCGCACAAGCTGGCTTCCCCTGCCCTGCTCTAAGAAACCCATCCGATCATTTCCTCCGGTGCATCAATGCTG ACTTCGACAAAGTGAAGGCTACTCTTAAAGGATCCATGAAGCTCCGGTTCGAGGCCTCCGAGGATCCTCTGGATCAGATCACCACTGCTGAAGCAATTCG TACTCTGATTGACTACTACCGCACTTCTCAATTCTGTTATGTAGCCAGGGAGAAAGTAGATGAGATCTCCAAAGTTAAAGGGACGGTGCTGGATGCCGGC GGGAGTCAAGCAAGTTTCCCGCTCCAGACTTTCACATTAACCAAGCGCTCTTTCGTCAACATGTCAAGGGACTTTGGTTACTACTGGCTCAGGCTCGTCA TCTACATTGTTGTCACCATCTGCATTGGTACCATATACCTCAATGTCGGCACCAGTTACAACTCAATCCTGGTTTTCCAAAGAGAGAGGCTGAACGGCCA TTATGGAGTGACTGCATTTGTGATCAGCAACACTCTCTCAGCAATGCCGTTCCTGATAACAATCACCGTCCTCTCTGGAACCATTTGCTACTTCATGGTC AGCCTCCACCCTGGTTTCACACATTACCTCTTCTTCGTGCTCTGCCTCTACGCCAGTGTCACTGTCGTTGAGAGCTTGATGATGGCTATCGCCAGCATCG TCCCCAACTTTCTGATGGGCATCATCATCGGAGCAGGAATTCAGGGAATATTCATGCTGGTCTCAGGATACTTCAGGCTGCCAAACGACATCCCCAAGCC CTTCTGGCGCTACCCAATGTCCTACATGAGCTTCCACTTCTGGGCTCTTCAGGGGCAATACCAGAACGACCTGAACGGCCTGCTATTCGACAACACAAGC CCGGATCTCCCCAAGATCCCCGGCGAATACATCCTGGAGAACATTTTCCAGATCGACGTGCACAGATCGAAGTGGATCGACCTCAGCGTGATCTTCAGCA TGATCGTGATCTACCGCATCATCTTCTTCGTGATGATCAAGGTCAGCGAGGATGTGACCCCTTGGATCAGAGGATACATGGCGAGGAGAAGAATGCAGCT CAAGAACGGCACCCAGAACACTACGATCGCTCCTGATGGACTCACTCAGTCGCCTTCTCTGAGGAACTTCGTGGCCAATCGAGCAGCTGGAAACGGCAAG ATGTAA
AA sequence Show only first row Show all	>Lus10018268 pacid=23179361 polypeptide=Lus10018268 locus=Lus10018268.g ID=Lus10018268.BGIv1.0 annot-version=v1.0 MGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRGLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF GQASDAYEFFAQAGFPCPALRNPSDHFLRCINADFDKVKATLKGSMKLRFEASEDPLDQITTAEAIRTLIDYYRTSQFCYVAREKVDEISKVKGTVLDAG GSQASFPLQTFTLTKRSFVNMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTSYNSILVFQRERLNGHYGVTAFVISNTLSAMPFLITITVLSGTICYFMV SLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPNDIPKPFWRYPMSYMSFHFWALQGQYQNDLNGLLFDNTS PDLPKIPGEYILENIFQIDVHRSKWIDLSVIFSMIVIYRIIFFVMIKVSEDVTPWIRGYMARRRMQLKNGTQNTTIAPDGLTQSPSLRNFVANRAAGNGK M

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10018268 [exp]	0	1
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10040644 [exp]	1.0	0.9691
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10034319 [exp]	2.0	0.9592
AT1G25450		KCS5, CER60	ECERIFERUM 60, 3-ketoacyl-CoA ...		Lus10041452 [exp]	2.4	0.9428
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009961 [exp]	3.2	0.9234
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10032840 [exp]	4.0	0.9243
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006856 [exp]	5.5	0.9175
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039256 [exp]	6.0	0.9042
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10021895 [exp]	6.0	0.8941
AT5G37550			unknown protein		Lus10020807 [exp]	6.3	0.9053
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10002557 [exp]	6.5	0.9151

Compare expression of checked genes

Lus10018268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.