Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12830 92 / 7e-24 SAUR-like auxin-responsive protein family (.1) AT1G56150 91 / 1e-23 SAUR-like auxin-responsive protein family (.1) AT1G16510 91 / 2e-23 SAUR-like auxin-responsive protein family (.1) AT1G79130 86 / 1e-21 SAUR-like auxin-responsive protein family (.1) AT3G61900 59 / 3e-11 SAUR-like auxin-responsive protein family (.1) AT5G42410 57 / 1e-10 SAUR-like auxin-responsive protein family (.1) AT4G22620 57 / 4e-10 SAUR-like auxin-responsive protein family (.1) AT2G46690 56 / 5e-10 SAUR-like auxin-responsive protein family (.1) AT1G43040 55 / 6e-10 SAUR-like auxin-responsive protein family (.1) AT1G19840 56 / 8e-10 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040643 [exp] 257 / 2e-88 AT1G16510 91 / 8e-24 SAUR-like auxin-responsive protein family (.1) Lus10031754 [exp] 87 / 2e-21 AT3G12830 170 / 2e-55 SAUR-like auxin-responsive protein family (.1) Lus10031178 [exp] 79 / 2e-18 AT1G56150 128 / 1e-38 SAUR-like auxin-responsive protein family (.1) Lus10012426 [exp] 59 / 4e-11 AT1G75590 181 / 2e-59 SAUR-like auxin-responsive protein family (.1) Lus10042374 [exp] 57 / 2e-10 AT5G10990 125 / 8e-38 SAUR-like auxin-responsive protein family (.1) Lus10012190 [exp] 57 / 3e-10 AT4G34750 147 / 4e-46 SAUR-like auxin-responsive protein family (.1.2) Lus10026297 [exp] 57 / 3e-10 AT5G10990 125 / 2e-37 SAUR-like auxin-responsive protein family (.1) Lus10026977 [exp] 57 / 4e-10 AT2G24400 184 / 1e-59 SAUR-like auxin-responsive protein family (.1) Lus10001397 [exp] 55 / 1e-09 AT2G28085 69 / 8e-16 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G096400 [exp] 86 / 2e-21 AT3G12830 164 / 2e-53 SAUR-like auxin-responsive protein family (.1) Potri.007G067800 [exp] 84 / 2e-20 AT3G12830 148 / 5e-47 SAUR-like auxin-responsive protein family (.1) Potri.006G278100 [exp] 67 / 1e-13 AT2G24400 179 / 5e-58 SAUR-like auxin-responsive protein family (.1) Potri.002G024500 [exp] 60 / 2e-11 AT1G75590 194 / 1e-64 SAUR-like auxin-responsive protein family (.1) Potri.005G237000 [exp] 59 / 4e-11 AT1G75590 200 / 4e-67 SAUR-like auxin-responsive protein family (.1) Potri.002G057500 [exp] 57 / 7e-11 AT3G12830 64 / 2e-14 SAUR-like auxin-responsive protein family (.1) Potri.002G000600 [exp] 56 / 4e-10 AT1G43040 113 / 2e-33 SAUR-like auxin-responsive protein family (.1) Potri.014G103300 [exp] 55 / 7e-10 AT2G46690 152 / 2e-49 SAUR-like auxin-responsive protein family (.1) Potri.009G125900 [exp] 55 / 1e-09 AT5G10990 157 / 5e-50 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 54 / 1e-09 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10018269 pacid=23179298 polypeptide=Lus10018269 locus=Lus10018269.g ID=Lus10018269.BGIv1.0 annot-version=v1.0 ATGAAGAAACTGTTCCGGACCCTCTCTGACAAGGTCCGTAAAATTAGCACCGGAAGAATGAGCTCCTCCGCCAGGGTCGGCGGCGGCTACTCCGTCCTCC GGCGTACCAGCTCCGATTCCGAGCTCCGGCAAAGGAGGATGAGGGGTAAGAACAAACTGGCCCAGCTGCTGCAGATGAGGCTCGGGAAGAAGAGATCGGC GGCGAGAGTTCCGGCTGGTCATTTCCCAGTTCAGGTAGGGAGCGATCAGGAGGCGGCGGAGACGTTTGTGGTAAGCGCCAAGCTGTTAAGGCACCCGGTG TTTGTGAACCTGCTGAAGATATCGGCGGCGGAGTTTGGGTACGGGCAGAGCGGCGTGCTGAGGATCCCAGTTCGGGTGATGGTTTTCGAGCGGGTTATGG AGCTGATTCGGTTGACGTCCAAGCTGTTAAGCCACCCGGTGTTTGTGAACCTGCGGAAGATATCGGCGGCGGAGTTTGGGTACGGGCAGAGCGGCGTGCT GAGGATCCCAGTTCGGGTGATGGTTTTCGAGCGGGTTATGGAGCTGATTCGGTTGACCAAGGACCCGGGTGAAGTGGTTGATTGGGACGAGGATTTCAAC GTGTGCAACTCACTTATTGACTAG
AA sequence Show only first row Show all	>Lus10018269 pacid=23179298 polypeptide=Lus10018269 locus=Lus10018269.g ID=Lus10018269.BGIv1.0 annot-version=v1.0 MKKLFRTLSDKVRKISTGRMSSSARVGGGYSVLRRTSSDSELRQRRMRGKNKLAQLLQMRLGKKRSAARVPAGHFPVQVGSDQEAAETFVVSAKLLRHPV FVNLLKISAAEFGYGQSGVLRIPVRVMVFERVMELIRLTSKLLSHPVFVNLRKISAAEFGYGQSGVLRIPVRVMVFERVMELIRLTKDPGEVVDWDEDFN VCNSLID

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16510			SAUR-like auxin-responsive pro...		Lus10018269 [exp]	0	1
AT5G65230	MYB	ATMYB53	myb domain protein 53 (.1)		Lus10039735 [exp]	1.0	0.9793
AT3G29810		COBL2	COBRA-like protein 2 precursor...		Lus10042386 [exp]	10.0	0.9013
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10039979 [exp]	18.2	0.9111
AT5G16023		RTFL18, DVL1	DEVIL 1, ROTUNDIFOLIA like 18 ...		Lus10034071 [exp]	28.2	0.9059
AT5G16023		RTFL18, DVL1	DEVIL 1, ROTUNDIFOLIA like 18 ...		Lus10003079 [exp]	31.9	0.9024
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	40.8	0.8973
					Lus10032770 [exp]	43.5	0.8888
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10027862 [exp]	44.6	0.8943
AT5G47540			Mo25 family protein (.1)		Lus10036523 [exp]	46.6	0.8923
					Lus10002921 [exp]	48.1	0.8882

Compare expression of checked genes

Lus10018269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.