Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45190 82 / 2e-17 Cyclin family protein (.1.2) AT4G19600 60 / 7e-10 CYCT1;4 Cyclin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040640 [exp] 425 / 2e-147 AT5G45190 587 / 0.0 Cyclin family protein (.1.2) Lus10038329 [exp] 201 / 3e-61 AT5G45190 483 / 3e-167 Cyclin family protein (.1.2) Lus10036192 [exp] 198 / 5e-60 AT5G45190 483 / 5e-167 Cyclin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G081600 [exp] 179 / 8e-52 AT5G45190 636 / 0.0 Cyclin family protein (.1.2) Potri.003G148800 [exp] 175 / 2e-50 AT5G45190 635 / 0.0 Cyclin family protein (.1.2) Potri.007G067100 [exp] 70 / 2e-13 AT5G45190 564 / 0.0 Cyclin family protein (.1.2) Potri.005G097400 [exp] 63 / 6e-11 AT5G45190 550 / 0.0 Cyclin family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018272 pacid=23179294 polypeptide=Lus10018272 locus=Lus10018272.g ID=Lus10018272.BGIv1.0 annot-version=v1.0 ATGAGCAAAATAAAGTGCCAGTCTCAGGGAAGTCAAGAAGTGCAAACTGGAGGTGGCCAAGCTCATTCAGGTCCGTCTAAAACACCTACTTCTAATGAAG AGCATGCACCAAAGCCAACATCATCTCGCTTGGGGACTGAGCACTCATATGGCAGTGCAGAGGGTGATAGTGTTATTACAGATCACAAGGTAGATTTAGA AAATGAGGATATTCGACGTCCAGATAACTTTTTTGTCAAGGAAACCCCGAGAGAAGCCTCGAACAAGTGTAGGTCTGCAGTAGAGCAGGTAAATGGAAAA GAAAGGACTGGTGAAAGGAGTGAAGAAGAGGGGAAGGACGATATGTCACACAAGCCTAGTGGTTTGGCGAGCCGGAACTTGGATTCGAGGGAAGCTGCAG TTGGTCATCAATCCCCTAAAGATGCTATAAAGATGATTGATAGAGACAAAGTAAAGGCAACGCTTGAGAAAAGAAAGAAAGCTCGCGGGGAAACGACGAG GAAAAAGGATGTGATGGACGAGGATGATCTTATCGAAAGGGAACTGGAGGATGGGATCGAGTTGGCTGCAGAGGATGAGAAAATCAAGCAGGAACAGAAC TGGTCGAAGATGGAAAGTGCAGGTTGTCGCATAAAGGAGGACAATGATGATGGTAACTATGAAGAAGGAAGGTTGGAGATGGACAATGCGGAGGAAGCGG AAATGGTAGAGGACGACGCTTCAGTGTTTTCCAACAGCCGAAAAAGAAAAGCTGGGAGCCCTTCTCCGAGGCAGTCAGACGGTAAGAAGCGGCAAGGTTG CTTATCCAACAGTTACGGCCATGATTCTCTTGAAGACGATCACGGCAGCAAGGGCTGA
AA sequence Show only first row Show all	>Lus10018272 pacid=23179294 polypeptide=Lus10018272 locus=Lus10018272.g ID=Lus10018272.BGIv1.0 annot-version=v1.0 MSKIKCQSQGSQEVQTGGGQAHSGPSKTPTSNEEHAPKPTSSRLGTEHSYGSAEGDSVITDHKVDLENEDIRRPDNFFVKETPREASNKCRSAVEQVNGK ERTGERSEEEGKDDMSHKPSGLASRNLDSREAAVGHQSPKDAIKMIDRDKVKATLEKRKKARGETTRKKDVMDEDDLIERELEDGIELAAEDEKIKQEQN WSKMESAGCRIKEDNDDGNYEEGRLEMDNAEEAEMVEDDASVFSNSRKRKAGSPSPRQSDGKKRQGCLSNSYGHDSLEDDHGSKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45190			Cyclin family protein (.1.2)		Lus10018272 [exp]	0	1
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10004841 [exp]	2.0	0.9285
AT5G10530			Concanavalin A-like lectin pro...		Lus10020447 [exp]	2.8	0.9195
AT2G45910			U-box domain-containing protei...		Lus10014771 [exp]	5.1	0.8852
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10035109 [exp]	7.7	0.8867
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10034090 [exp]	9.8	0.8717
AT2G24600			Ankyrin repeat family protein ...		Lus10024845 [exp]	9.9	0.8968
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10016941 [exp]	10.4	0.8904
					Lus10003893 [exp]	11.1	0.9164
AT3G28540			P-loop containing nucleoside t...		Lus10007270 [exp]	11.1	0.9156
					Lus10017219 [exp]	13.4	0.8673

Compare expression of checked genes

Lus10018272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.