Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31330 273 / 2e-92 PSAF photosystem I subunit F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040639 [exp] 313 / 5e-108 AT1G31330 338 / 4e-119 photosystem I subunit F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G081500 [exp] 290 / 6e-99 AT1G31330 304 / 7e-106 photosystem I subunit F (.1) Potri.003G148900 [exp] 155 / 5e-47 AT1G31330 177 / 4e-57 photosystem I subunit F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02507 [flax] [poplar] PSI_PsaF Photosystem I reaction centre subunit III
Representative CDS sequence Show only first row Show all	>Lus10018273 pacid=23179348 polypeptide=Lus10018273 locus=Lus10018273.g ID=Lus10018273.BGIv1.0 annot-version=v1.0 ATGCAGGCCACACGACGACGCCACACAAATCTCACTGAAACGGATCAGATAATCACTGAGAATCAACACAATCTCAATCCCACCGCCAATCACCACATTC CACCTCAGCATCCTCCTTCCTCAACCCTTATCCCTCCACTTCATATCTCATATCGCCATTTCCATCAACAACTCGAAGCAGAAGAACAACAAACACTTCC AAGTTCCAAATCAGTCTTCTCTGAAGAAGCAACAAAAAGAGAAGAAAAACCAACCATGTCTCTCACAATCCCAACCAACCTCTCAAACCCACTCCTAAAG CTCAACACAAAACTAACCCCAAAACCCCAATCCCGATCCCTAATCGTCTGCTCCGCCTCCTCCAATGACAACTCCACCACCACCGCCACCCCACTCAAGG CCTTCTCCGCCGCCTTAGCCCTCTCCTCAATCCTCCTCACCTCCGCCCCACTCCCAGCAACCGCCGACATCGCCGGACTCACCCCGTGCAAAGACTCCAA ACAATTCGCCAAACGAGAGAAGCAATCCTTGAAAAAACTGGAATCCTCCCTCAAAATCTACGCCCCCGACAGCGCCCCCGCCCTAGCAATCAAGGCCACC ATGGAGAAGACTAAGCGCCGGTTCGCCAACTACGCCAAGCAAGGATTGCTCTGCGGATCCGATGGGCTGCCGCACTTGATCGTGAGCGGCGACCAGAAAC ATTGGGGTGAGTTCATCACTCCGGGGATTCTGTTTCTGTACATTGCTGGGTGGATCGGGTGGGTTGGGAGGAGCTACCTGATTGCGATCAGCGGGGAGAA GAAGCCGGCTATGAAGGAGATTATCATCGATGTTCCGTTGGCTACTGGGATTATCTTTAGGGGATTCTCCTGGCCTATTGCTGCTTACAGAGAGTTGATT AATGGTGATCTTGTTGTCAAGGATGTTTGA
AA sequence Show only first row Show all	>Lus10018273 pacid=23179348 polypeptide=Lus10018273 locus=Lus10018273.g ID=Lus10018273.BGIv1.0 annot-version=v1.0 MQATRRRHTNLTETDQIITENQHNLNPTANHHIPPQHPPSSTLIPPLHISYRHFHQQLEAEEQQTLPSSKSVFSEEATKREEKPTMSLTIPTNLSNPLLK LNTKLTPKPQSRSLIVCSASSNDNSTTTATPLKAFSAALALSSILLTSAPLPATADIAGLTPCKDSKQFAKREKQSLKKLESSLKIYAPDSAPALAIKAT MEKTKRRFANYAKQGLLCGSDGLPHLIVSGDQKHWGEFITPGILFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLATGIIFRGFSWPIAAYRELI NGDLVVKDV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31330		PSAF	photosystem I subunit F (.1)		Lus10018273 [exp]	0	1
AT1G31330		PSAF	photosystem I subunit F (.1)		Lus10040639 [exp]	1.0	0.9853
AT3G54890		LHCA1	photosystem I light harvesting...		Lus10040391 [exp]	2.0	0.9613
AT1G74470			Pyridine nucleotide-disulphide...		Lus10021665 [exp]	3.9	0.9348
AT3G54890		LHCA1	photosystem I light harvesting...		Lus10023509 [exp]	3.9	0.9521
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Lus10021923 [exp]	6.3	0.9369
AT4G28660		PSB28	photosystem II reaction center...		Lus10022867 [exp]	6.9	0.9247
AT4G37200		HCF164	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10022477 [exp]	10.4	0.9224
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Lus10006243 [exp]	10.6	0.9088
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Lus10041209 [exp]	11.0	0.9235
AT1G14345			NAD(P)-linked oxidoreductase s...		Lus10037201 [exp]	11.8	0.9247

Compare expression of checked genes

Lus10018273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.