Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31320 229 / 8e-78 AS2 LBD4 LOB domain-containing protein 4 (.1) AT2G30130 185 / 5e-60 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT1G16530 174 / 4e-56 AS2 ASL9, LBD3 LOB DOMAIN-CONTAINING PROTEIN 3, ASYMMETRIC LEAVES 2-like 9 (.1) AT5G63090 157 / 3e-49 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT1G07900 153 / 2e-47 AS2 LBD1 LOB domain-containing protein 1 (.1) AT2G30340 152 / 4e-46 AS2 LBD13 LOB domain-containing protein 13 (.1) AT2G28500 151 / 4e-46 AS2 LBD11 LOB domain-containing protein 11 (.1) AT3G27650 148 / 5e-46 AS2 LBD25 LOB domain-containing protein 25 (.1) AT2G40470 145 / 3e-44 AS2 ASL11, LBD15 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) AT2G23660 145 / 6e-43 AS2 LBD10 LOB domain-containing protein 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040638 [exp] 307 / 2e-108 AT1G31320 244 / 1e-83 LOB domain-containing protein 4 (.1) Lus10031191 [exp] 201 / 4e-67 AT1G31320 199 / 2e-66 LOB domain-containing protein 4 (.1) Lus10031769 [exp] 199 / 5e-66 AT1G31320 193 / 8e-64 LOB domain-containing protein 4 (.1) Lus10031855 [exp] 180 / 2e-58 AT2G30130 220 / 4e-74 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10031285 [exp] 180 / 4e-58 AT2G30130 226 / 3e-76 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10007525 [exp] 179 / 7e-58 AT2G30130 204 / 1e-67 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10017431 [exp] 173 / 1e-55 AT2G30130 199 / 1e-65 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10009930 [exp] 160 / 4e-50 AT2G30340 230 / 5e-76 LOB domain-containing protein 13 (.1) Lus10040373 [exp] 156 / 4e-48 AT2G28500 211 / 7e-69 LOB domain-containing protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G149000 [exp] 274 / 2e-95 AT1G31320 241 / 2e-82 LOB domain-containing protein 4 (.1) Potri.001G081400 [exp] 273 / 3e-95 AT1G31320 228 / 3e-77 LOB domain-containing protein 4 (.1) Potri.007G066700 [exp] 224 / 2e-76 AT1G31320 216 / 3e-73 LOB domain-containing protein 4 (.1) Potri.005G097800 [exp] 218 / 1e-73 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1) Potri.010G184400 [exp] 185 / 2e-60 AT2G30130 227 / 7e-77 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.001G281600 [exp] 183 / 7e-60 AT2G30130 248 / 4e-85 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.008G072800 [exp] 183 / 9e-60 AT2G30130 229 / 8e-78 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.009G076900 [exp] 177 / 1e-57 AT2G30130 228 / 2e-77 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.008G043900 [exp] 160 / 5e-50 AT1G07900 218 / 2e-72 LOB domain-containing protein 1 (.1) Potri.010G217700 [exp] 158 / 2e-49 AT1G07900 203 / 1e-66 LOB domain-containing protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10018275 pacid=23179337 polypeptide=Lus10018275 locus=Lus10018275.g ID=Lus10018275.BGIv1.0 annot-version=v1.0 ATGAAGGAGAATAATGGGAGGAAGCAAGGTGGTGCGGCGGCGTCGCCATGCGCGGCGTGCAAGCTGTTGAGGAGGAGGTGCGCACAGGACTGCGTGTTCT CTCCGTATTTCCCGGCAGACCAGCCTCATAAGTTCGCCAATGTCCACAAGGTCTTCGGCGCCAGCAATGTCAACAAGATGCTTCAGGAACTACCGGTGCA CCAACGAGGCGACGCGGTGAGCAGCATGGTGTACGAAGCCAACGCCCGGGTGCGCGACCCGGTCTATGGCTGCGTCGGAGCGATCTCATCGCTCCAGCAG CAGATTGACGTGCTGCAAACCCAGCTAGCTCTGGCCCAAGCTGAGGTGGTCCACCTCCGGGTCCGACAGACTGCAGGCTTATCCGGTCATGGGCTGAGCT CCGGAAGCCCAAGTCACAGTGGGTCGCCTTCTTCAAGGCTCATGGGGATTTCTCAAGGGAAGCCCATTTTCGACATGGATATGGTGGACCACGCCAGCTT GGGAGAGTCCATGTGGTCCTGCTAG
AA sequence Show only first row Show all	>Lus10018275 pacid=23179337 polypeptide=Lus10018275 locus=Lus10018275.g ID=Lus10018275.BGIv1.0 annot-version=v1.0 MKENNGRKQGGAAASPCAACKLLRRRCAQDCVFSPYFPADQPHKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQ QIDVLQTQLALAQAEVVHLRVRQTAGLSGHGLSSGSPSHSGSPSSRLMGISQGKPIFDMDMVDHASLGESMWSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10018275 [exp]	0	1
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10010917 [exp]	4.5	0.8597
AT3G07390		AIR12	Auxin-Induced in Root cultures...		Lus10038224 [exp]	4.8	0.9023
					Lus10036400 [exp]	16.2	0.8401
AT3G07390		AIR12	Auxin-Induced in Root cultures...		Lus10025879 [exp]	17.4	0.8856
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031202 [exp]	17.7	0.8036
AT2G37900			Major facilitator superfamily ...		Lus10012663 [exp]	20.3	0.8600
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10002440 [exp]	22.0	0.8533
AT4G22790			MATE efflux family protein (.1...		Lus10007006 [exp]	23.7	0.7926
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10042012 [exp]	25.6	0.8082
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10038350 [exp]	34.6	0.8426

Compare expression of checked genes

Lus10018275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.