Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02910 142 / 4e-41 AIG2-like (avirulence induced gene) family protein (.1) AT1G80245 117 / 3e-32 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2), Spc97 / Spc98 family of spindle pole body (SBP) component (.3) AT4G00695 110 / 1e-29 unknown protein AT5G46720 105 / 4e-27 AIG2-like (avirulence induced gene) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040637 [exp] 208 / 7e-68 AT1G80245 116 / 9e-35 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2), Spc97 / Spc98 family of spindle pole body (SBP) component (.3) Lus10040635 [exp] 208 / 1e-67 AT3G02910 135 / 4e-41 AIG2-like (avirulence induced gene) family protein (.1) Lus10042425 [exp] 191 / 9e-61 AT1G80245 108 / 2e-31 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2), Spc97 / Spc98 family of spindle pole body (SBP) component (.3) Lus10018344 [exp] 174 / 1e-54 AT1G80245 86 / 5e-23 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2), Spc97 / Spc98 family of spindle pole body (SBP) component (.3) Lus10034712 [exp] 151 / 7e-45 AT5G46720 159 / 3e-50 AIG2-like (avirulence induced gene) family protein (.1) Lus10026245 [exp] 117 / 1e-32 ND 48 / 3e-08 Lus10040471 [exp] 0 / 1 ND 52 / 1e-26
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G041100 [exp] 206 / 2e-66 AT3G02910 220 / 7e-74 AIG2-like (avirulence induced gene) family protein (.1) Potri.003G149100 [exp] 114 / 3e-31 AT1G80245 91 / 3e-24 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2), Spc97 / Spc98 family of spindle pole body (SBP) component (.3) Potri.003G092600 [exp] 113 / 5e-30 AT5G46720 144 / 8e-44 AIG2-like (avirulence induced gene) family protein (.1) Potri.001G081300 [exp] 99 / 2e-25 AT1G80245 80 / 5e-20 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2), Spc97 / Spc98 family of spindle pole body (SBP) component (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0278 [flax] [poplar] AIG2 PF06094 [flax] [poplar] GGACT Gamma-glutamyl cyclotransferase, AIG2-like
Representative CDS sequence Show only first row Show all	>Lus10018276 pacid=23179373 polypeptide=Lus10018276 locus=Lus10018276.g ID=Lus10018276.BGIv1.0 annot-version=v1.0 ATGGGCGTCGGCGAAAGAAGGGAGAACCGCCAGCACCCGGCGGCGGTGATTTTCACATACGGCACTCTGAAGAAGGGCTTCTCCAATCACCGCTTGCTGC AAGATCTGATGCAGACAGGAGACGCAGTCTTCCGATGCAATTGCCGAACCGTCGACGCCTTCCCTCTCGTTTGTGGTCCTTACCGTGTACCTTTCCTCCT CAACCTTCCCGGAGCTGACGGAGCCAATCGAGTCTCCGGCGAGATGTACGCCGTCTCTGACCCCGTCTCGGCGCGTGTTCCCGCCCGCCTGGACGAGCTT GAAGGCCCCTCCACCGGCCATTACGAGCGGTTGCCGATTGAGGTGGAGCCTGCGGACGGTGGAGAAGAGGAGATCGAGTCTGTGGAGGCATATTTCGCGG AGAGGAGCTACGCGGTGGATATGTGGGAGAAGAGCGGGAAGATCGGGTATTCCGTGTACGGAGAGAAGGAATCGAAAGGATACCCAAAAAGCCGGTCGAC CCAGTTACATACAAACCGACTAAAGCCCGGCCCAGAACCCGCTTTTAATTTCAACCCGAGTTTGTTCGATGCAGCTTTCCTCGAGTTTAGGCCGTCAATC TCCGCAGAGATTCAGGAAAATCTACGATTTCCCGCCCTGGATGACGTAAACAAGCTTATAGAGAACAGCAGGATTGACGATGTACAGTGGCTCTGTTCCC TGTCCGAGTCTGAGCTTGACGTCCTGATCAGCTTGAAGAATCTGGTGATTCGGCGGGCTAACGCTATTGGTCATGAGGAACTCGCCGACAAATTTAACTT AAAGTTGCTCCGAGCACTTGGACTAGTTGTCATGGAGCATTTCAGAGAAAAGGTGAAGGGTTTGCCAACAGTACCTGGGATGGACAAATGCACTGCATAT ATAGATGGTTGCAACTTGCTAAAGTCTAAGATTGGGGATAACTTAAGCATTGAAGAGTTGAAGTCTCATCTTAAAAGACCAAGTAAAAGGTAG
AA sequence Show only first row Show all	>Lus10018276 pacid=23179373 polypeptide=Lus10018276 locus=Lus10018276.g ID=Lus10018276.BGIv1.0 annot-version=v1.0 MGVGERRENRQHPAAVIFTYGTLKKGFSNHRLLQDLMQTGDAVFRCNCRTVDAFPLVCGPYRVPFLLNLPGADGANRVSGEMYAVSDPVSARVPARLDEL EGPSTGHYERLPIEVEPADGGEEEIESVEAYFAERSYAVDMWEKSGKIGYSVYGEKESKGYPKSRSTQLHTNRLKPGPEPAFNFNPSLFDAAFLEFRPSI SAEIQENLRFPALDDVNKLIENSRIDDVQWLCSLSESELDVLISLKNLVIRRANAIGHEELADKFNLKLLRALGLVVMEHFREKVKGLPTVPGMDKCTAY IDGCNLLKSKIGDNLSIEELKSHLKRPSKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02910			AIG2-like (avirulence induced ...		Lus10018276 [exp]	0	1
					Lus10038116 [exp]	4.6	0.8013
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10022199 [exp]	5.3	0.8270
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10004121 [exp]	7.2	0.8125
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10015970 [exp]	8.7	0.8080
AT2G16710			Iron-sulphur cluster biosynthe...		Lus10021368 [exp]	8.9	0.7520
AT5G10750			Protein of unknown function (D...		Lus10042428 [exp]	9.8	0.8068
AT3G02910			AIG2-like (avirulence induced ...		Lus10040635 [exp]	14.5	0.7917
AT5G43190			Galactose oxidase/kelch repeat...		Lus10010610 [exp]	14.6	0.7404
AT1G80180			unknown protein		Lus10014488 [exp]	14.7	0.8010
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Lus10036644 [exp]	18.2	0.7986

Compare expression of checked genes

Lus10018276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.