Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19610 740 / 0 nucleotide binding;nucleic acid binding;RNA binding (.1) AT5G08695 526 / 3e-177 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G05720 103 / 5e-23 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G20030 69 / 2e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G16380 72 / 9e-13 PAB6 poly(A) binding protein 6 (.1) AT5G06210 66 / 1e-12 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT4G34110 71 / 3e-12 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G07350 64 / 4e-12 SR45a serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G36960 69 / 5e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G46020 60 / 6e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040636 [exp] 1269 / 0 AT4G19610 700 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10002093 [exp] 74 / 3e-13 AT5G09880 600 / 0.0 Splicing factor, CC1-like (.1) Lus10000826 [exp] 72 / 8e-13 AT5G09880 589 / 0.0 Splicing factor, CC1-like (.1) Lus10013306 [exp] 64 / 5e-12 AT5G06210 94 / 3e-25 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10028400 [exp] 65 / 1e-11 AT4G35785 181 / 2e-57 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10023723 [exp] 67 / 2e-11 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10010370 [exp] 67 / 3e-11 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10014392 [exp] 67 / 3e-11 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1) Lus10006936 [exp] 62 / 4e-11 AT4G20030 137 / 4e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G149600 [exp] 927 / 0 AT4G19610 646 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Potri.001G081000 [exp] 141 / 6e-39 AT4G19610 105 / 3e-27 nucleotide binding;nucleic acid binding;RNA binding (.1) Potri.009G163400 [exp] 76 / 3e-14 AT3G52660 400 / 9e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G201900 [exp] 74 / 2e-13 AT3G52660 422 / 2e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.005G148100 [exp] 73 / 5e-13 AT5G09880 553 / 0.0 Splicing factor, CC1-like (.1) Potri.007G009800 [exp] 72 / 1e-12 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.006G212400 [exp] 70 / 3e-12 AT3G52660 473 / 1e-164 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G137200 [exp] 69 / 7e-12 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.004G177000 [exp] 69 / 8e-12 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.006G208500 [exp] 64 / 1e-11 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10018277 pacid=23179277 polypeptide=Lus10018277 locus=Lus10018277.g ID=Lus10018277.BGIv1.0 annot-version=v1.0 ATGTTGTATAGGTCTAGAATATGCGTGAAGAATTTGGCGAAATACGTGACGGAGGACCAATTGCGGGAACACTTTTCTCTGAAAGGAGAAATAACAGATG CCAAGCTAATGCGGACCAAAGAAGGTAAAAGTAGGCAATTTGCTTTCATCGGTTTCCGTAGCGAAGCTGAAGCTGAAGAAGCTATCAGACACTTCAATAA GTCTTTCCTCGGTACTTCTAGAATTGAATGCGAGATTGCCCGAAAACAAGGGGATCCAAATATTCCTCGTCCATGGAGTCGTCATTCAGTAAATAAAAGT GGAGAAGTAATTGCAGATGAAAACAAAGCTTCAGGAGCTGGTAGTTTGAAGGTTGAGGGTCCCAAAGGGGATGCCAAGCATGATCAGGAAGGCAATGAGA CTGATGACCCGAAATTCAGAGAATTTCTTGAGGCCATGAAACCACGAGCTAAGTCAAAATTGTGGTCAGATGACGCCCCACTTCCTACAGTGCCTAACCA CAATGGCAAAGCTGGCAAAAAGGTTAGTCAAACGGAGAATGGAAGTAAAGAGAAGTTGGGTACATTAGATGTCGAGACAAAGGAAAGCGCCACTGAAAAA TTGAATATCGTTAATAACGAAGTCATGTCAGATACGGATTATTTGAAAAGTAAAATGAAGAAAAACTGGTCAGATTCAGACAGTGATGATGATCTGGAAG GTGAAGGCCATGGTGATGAAAAGGTCAGTCATTCACCTAATGAAAGACTTGATGCGAATGATGGGATGGTAGAAGATGAACCGACGGTTGTGAATGAAGA AGATGGAAAATCTGTTGACGCTAAAACATCATCAAATGTGGAAGACGAGACTTTTGAGGCTGGTCGGTTGTTTATAAGAAATCTACCATACACAGCAACC GAGGAAGAACTGGAAGAGCACTTTAGCAAGATTGGCGATACATCAGAGGTCCATCTTGTTGTTGACAAGGAGACAAAACAGTCAAAAGGCTTTGCATATG TTCGTTACGCCCATTCAGATTCTGCTACTAGGGCATTGGAGGAATTGGACAATACAATTTTCCAAGGCAGACTGTTGCATGTCATGCCAGCAAAAAAGAA GCATACATCAGATAACTTCGAGGTGGACCCAGGCTTAAAAACTGTTAAGCAGCGGAGGGAAGATCAAAAGAAGGAAGCTGAAGCTGGTGGAGATACAAGA GCATGGAATAGTTTGTTCATGCGCAGTGATACAGTTGTTGAGAACATAGCCCGGAGACATGGTGTGAGTAAAAGTGAGATACTTGACCCATCAGCTGATG ATCTTGCTGTACGTGTCGCTTTGGGAGAAACTCAAGTACTTGCAGAGACAAAAAAAGCTCTTGCGACTGCCGGAGTAAATGTAAAATCTTTGGAGGAAAT TGCTGCTGGCAATACTGATGGCTTGAAAAGGAGCAAAGATGTTCTTTTGGTGAAGAACTTGCCATACGCCTCTTCTGAAGCTGAACTAGCTCAGATGTTC GGGAAATTTGGTACTCTCGACAAAATTATTCTTCCCCCAACGAAGACAATGGGCCTGATTATGAACGTGCTGGTGGGATACGGAGAACTGTTCTGTACTT CCACTCTTCCGCAGTTGGGACTTATATCTTTTCCTTATGTTAGGGATGCCCCGCTTTATTTGGAATGGGCTCCGGCTGATATTCTCAGTCCAAGTGCAAC TTCTAAGGGCGAGTATACTAATAATACAACTGCTGATCAAGATGATTTGAAGAGGGTGATACTGGAGCAAACTATTGAAGGAACAACTGAAACTGATTTA GATCCAGACAGAACTGAGTCTCGTTCTTTGTACGTAAAGAACTTGAATTTCAAGACATCCGATGATGGTTTGAAGCAGCATTTCACCAAACTCATGAAGT ACGGGAAAGTCTTAAGTGCCAGGGGTTTTGGCTTTTTGGAGTTTGACTCAGTGGAGACGGCAGCAAATATCTGCAGAGATTTGCAGGGAACAATTCTGGA TGGACATGCACTCATCCTGCAACTTTGTCATGCCGGTAAAGATGAGCAGCAGGTGAAGAAAAAGGTTGGGAAAGATACAAGTTCTACAAAACTGCTCGTC AGAAATGTGGCCTTCGAAGCAACAGAAAAGGACCTTAGACAACTATTCAGCCCATTTGGCCAGATCAAGAGCTTGAGGTTGCCGAAGAAGATGGGAACAA AGCAGCACAGAGGGTTTGCTTTCGTCGAGTTTGTTACAAAGCAAGAGGCCCAGAATGCAATCGATGCGCTCTCGAGCACGCATTTGTACGGTCGACATTT GAATCTAACGAGAGCCAAGGAAGGTGAGACCCTGGAAGAGCTACGAGAACGAACCACTGCTCAGTTTGCTGACGCAGAAAACTGGACCGAATCTTCAAAG AAGAGGAAGAACATGCCCGTCTTGGATGAAGGAACGATGAAGTTTCAACGGTTTGAGGATTGA
AA sequence Show only first row Show all	>Lus10018277 pacid=23179277 polypeptide=Lus10018277 locus=Lus10018277.g ID=Lus10018277.BGIv1.0 annot-version=v1.0 MLYRSRICVKNLAKYVTEDQLREHFSLKGEITDAKLMRTKEGKSRQFAFIGFRSEAEAEEAIRHFNKSFLGTSRIECEIARKQGDPNIPRPWSRHSVNKS GEVIADENKASGAGSLKVEGPKGDAKHDQEGNETDDPKFREFLEAMKPRAKSKLWSDDAPLPTVPNHNGKAGKKVSQTENGSKEKLGTLDVETKESATEK LNIVNNEVMSDTDYLKSKMKKNWSDSDSDDDLEGEGHGDEKVSHSPNERLDANDGMVEDEPTVVNEEDGKSVDAKTSSNVEDETFEAGRLFIRNLPYTAT EEELEEHFSKIGDTSEVHLVVDKETKQSKGFAYVRYAHSDSATRALEELDNTIFQGRLLHVMPAKKKHTSDNFEVDPGLKTVKQRREDQKKEAEAGGDTR AWNSLFMRSDTVVENIARRHGVSKSEILDPSADDLAVRVALGETQVLAETKKALATAGVNVKSLEEIAAGNTDGLKRSKDVLLVKNLPYASSEAELAQMF GKFGTLDKIILPPTKTMGLIMNVLVGYGELFCTSTLPQLGLISFPYVRDAPLYLEWAPADILSPSATSKGEYTNNTTADQDDLKRVILEQTIEGTTETDL DPDRTESRSLYVKNLNFKTSDDGLKQHFTKLMKYGKVLSARGFGFLEFDSVETAANICRDLQGTILDGHALILQLCHAGKDEQQVKKKVGKDTSSTKLLV RNVAFEATEKDLRQLFSPFGQIKSLRLPKKMGTKQHRGFAFVEFVTKQEAQNAIDALSSTHLYGRHLNLTRAKEGETLEELRERTTAQFADAENWTESSK KRKNMPVLDEGTMKFQRFED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19610			nucleotide binding;nucleic aci...		Lus10018277 [exp]	0	1
AT3G11964			RNA binding;RNA binding (.1)		Lus10016216 [exp]	3.9	0.9355
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10018858 [exp]	4.5	0.9013
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10040493 [exp]	6.5	0.9221
AT2G18220			Noc2p family (.1)		Lus10027010 [exp]	8.3	0.9174
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10022945 [exp]	9.4	0.9092
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	11.0	0.8558
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10011299 [exp]	11.2	0.8889
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10024128 [exp]	14.0	0.9086
AT4G26600			S-adenosyl-L-methionine-depend...		Lus10023095 [exp]	14.9	0.9056
AT4G34910			P-loop containing nucleoside t...		Lus10015433 [exp]	15.7	0.9045

Compare expression of checked genes

Lus10018277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.