Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14050 805 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G25360 446 / 8e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37170 439 / 4e-146 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 439 / 7e-145 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 437 / 3e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 436 / 3e-144 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G06540 420 / 9e-140 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 427 / 3e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 420 / 4e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 417 / 4e-137 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040634 [exp] 1084 / 0 AT4G14050 705 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 424 / 4e-141 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040504 [exp] 416 / 6e-138 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030581 [exp] 432 / 2e-137 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10016425 [exp] 418 / 7e-137 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10001617 [exp] 409 / 2e-135 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030908 [exp] 424 / 1e-134 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10031989 [exp] 407 / 2e-133 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 404 / 3e-133 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G321700 [exp] 923 / 0 AT4G14050 808 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 470 / 1e-157 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G027800 [exp] 446 / 8e-148 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 444 / 5e-147 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.001G369900 [exp] 435 / 1e-145 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 437 / 2e-145 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086200 [exp] 427 / 2e-141 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G208000 [exp] 426 / 2e-141 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G051300 [exp] 421 / 1e-139 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 422 / 9e-139 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10018278 pacid=23179288 polypeptide=Lus10018278 locus=Lus10018278.g ID=Lus10018278.BGIv1.0 annot-version=v1.0 ATGGTAGCTTCTCGCTACCTTTCGCAGCTACGCCTCTGCGCAAAATCACGTATCCCATCATCGGTCAAGCAGCTCCATCCTCAACTCATCAAGAACGGCA TCAACCACTGCATTCCATTAGCCAACACCTTGCTCGACGCATACGGAAAATGTGGCCTTGTCCAGGATGCTCGCCAAGTGTTCGACGAAATGCCCAACCG AGACCATGTCTCTTGGGCTTCCATTCTCACTGCGCACAATCAGGCCAACCTCCCCGGTGCGACTCTCTCCATTTTCCCGTCCATGCTGTCTTGTGACAGT TTGCTGCCTGACAATTTCGTGTACGCTACTCTGGTCAAGTCTTGTGCCGGGTTGTGTGCTATAAGGCAAGGGAAGCAGGTACACGCTCAGTTTGTTGTAT CTCCTTATAACCATGATGACGTTGTGAAATCGTCTTTGGTTGATCTGTATGCCAAGTGTGGATTACCTTTGGCAGCTCGCAGTGTGTTTGATTCGATTAT GGTGAAGTCCTCGATTTCGTGGACTTCGGTTATATCAGGGTATGCTAGGAGTGGGTTGAAATCAGAGGGAATGGAGCTCTTGTTGAGTACACCGTACAGG AACTTGTATTCATGGACTGCGTTGATATCTGGATTAGTGCAAAGTGGGAACACTGCCGATGCTTCTCTTTTGTTCATTGAAATGAGAAGAGATGGGATTG AGATAGTGGATCCATTAGTTGTTTCGACTGTGGTTGCTGCTTGTGCTAATTTAGCTTCCTTGGAGTTTGGAAAGCAGGTTCATGGCCTGGTTTTGGCACT CGGGTATGGATCTTGCTTGTTTATAGATAATGCACTTGTTGATATGTATGCCAAATGTAGTGATCTTTTGTCAGCCAGGAGGATTTTTGATGCAATGGTT TGGAGGGATGTTGTATCCTGGACTTCTCTTATAGTCGGGGAGGCAAAACATGGAAAAGCCATGGAAGTATTGGAATTATATGATCAGATGGTTACGTCGG GAGTAAAGCCGAATAACGTTACCTTTGTTGGATTGATTTATGCATGCAGTCATGCCGGGTTAGTTAGTAAAGGACGTCAACTTTTCAAATCGATGATTGA GGATTACAGGATTACTCCATCCTTGCAACACTTTACATGTTTATTGGATCTCTTCAGTCGGTCTGGGGACCTTGTTGAGGCTGAGAATTTAATCACGACA ATGCCATTTGAGCCTGACGAGCCAACATGGGCGGCTTTATTGAGCGCGTGCAAGAAATATGGGAACAAACAAGTTGGAGTTAGAATTGCAAATCGTCTAC TGGGCTTAAATCCACAGGATTTTTCATCATATATCTTACTATCTAATGTCTATGCTGGAGCTGGAATGTGGGAACGTGTTTCAATGATAAGGAAATTGAT AACAAGTTTGGAGGTTAAAAAAGAACCAGGTTATAGTTGCATTACCCTTGGAAAAGAGAGGCAAGTATTTTATGCTGGGGAGACGTTTGATCCTGCTCTG AAAGGTGAGATACTTCATTTGCTTAATGAGCTGGACAAAGAGATGAGACGGAGAGGTTATTTGCCAGATACTAGTTGTGTTCTAATGGATATGGAGGAAC AGGAGAAAGAAAGGCAATTATTTTGGCACAGCGAAAGGATCGCTGTGGCTTATGGACTACTCAAAGCTGTTCCAAAGACTGTGATAAGGATTGTGAAAAA TCTCCGTGTATGTGGGGATTGCCACAATGTTCTCAAACACGTTAGCAGTATTGTTGAACGAGAGATAATTGTCCGAGATGCAACCCGCTATCATCATTTT GCTAATGGAAAGTGTTCTTGCAATGATTTCTGGTGA
AA sequence Show only first row Show all	>Lus10018278 pacid=23179288 polypeptide=Lus10018278 locus=Lus10018278.g ID=Lus10018278.BGIv1.0 annot-version=v1.0 MVASRYLSQLRLCAKSRIPSSVKQLHPQLIKNGINHCIPLANTLLDAYGKCGLVQDARQVFDEMPNRDHVSWASILTAHNQANLPGATLSIFPSMLSCDS LLPDNFVYATLVKSCAGLCAIRQGKQVHAQFVVSPYNHDDVVKSSLVDLYAKCGLPLAARSVFDSIMVKSSISWTSVISGYARSGLKSEGMELLLSTPYR NLYSWTALISGLVQSGNTADASLLFIEMRRDGIEIVDPLVVSTVVAACANLASLEFGKQVHGLVLALGYGSCLFIDNALVDMYAKCSDLLSARRIFDAMV WRDVVSWTSLIVGEAKHGKAMEVLELYDQMVTSGVKPNNVTFVGLIYACSHAGLVSKGRQLFKSMIEDYRITPSLQHFTCLLDLFSRSGDLVEAENLITT MPFEPDEPTWAALLSACKKYGNKQVGVRIANRLLGLNPQDFSSYILLSNVYAGAGMWERVSMIRKLITSLEVKKEPGYSCITLGKERQVFYAGETFDPAL KGEILHLLNELDKEMRRRGYLPDTSCVLMDMEEQEKERQLFWHSERIAVAYGLLKAVPKTVIRIVKNLRVCGDCHNVLKHVSSIVEREIIVRDATRYHHF ANGKCSCNDFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10018278 [exp]	0	1
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10022701 [exp]	1.0	0.9009
AT4G35130			Tetratricopeptide repeat (TPR)...		Lus10035619 [exp]	2.4	0.8792
AT3G60400			Mitochondrial transcription te...		Lus10013142 [exp]	3.0	0.8684
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10032922 [exp]	3.9	0.8886
AT5G63290			Radical SAM superfamily protei...		Lus10001104 [exp]	4.0	0.8866
AT1G71210			Pentatricopeptide repeat (PPR)...		Lus10009626 [exp]	6.5	0.8982
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10033639 [exp]	6.6	0.8265
AT1G71060			Tetratricopeptide repeat (TPR)...		Lus10001633 [exp]	7.4	0.8598
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10013264 [exp]	7.5	0.8713
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016663 [exp]	7.7	0.8840

Compare expression of checked genes

Lus10018278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.