Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28460 73 / 2e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G61520 73 / 2e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 55 / 2e-08 PGR3 proton gradient regulation 3 (.1) AT1G02060 54 / 4e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G07290 53 / 8e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 52 / 2e-07 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G51965 52 / 2e-07 ABO5 ABA Overly-Sensitive 5 (.1) AT5G18390 52 / 2e-07 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 51 / 4e-07 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52640 50 / 4e-07 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040633 [exp] 170 / 3e-48 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014660 [exp] 60 / 6e-10 AT3G04760 522 / 3e-180 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10000554 [exp] 59 / 8e-10 AT3G04760 535 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10021989 [exp] 59 / 1e-09 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 56 / 1e-08 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026191 [exp] 55 / 2e-08 AT3G14580 391 / 2e-134 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023650 [exp] 55 / 3e-08 AT5G21222 623 / 0.0 protein kinase family protein (.1) Lus10034924 [exp] 54 / 5e-08 AT5G21222 599 / 0.0 protein kinase family protein (.1) Lus10037968 [exp] 54 / 7e-08 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G090400 [exp] 103 / 5e-25 AT5G28460 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G379500 [exp] 62 / 7e-11 AT3G14580 442 / 2e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 56 / 8e-09 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G105000 [exp] 54 / 3e-08 AT1G51965 855 / 0.0 ABA Overly-Sensitive 5 (.1) Potri.010G241300 [exp] 52 / 1e-07 AT5G04810 1230 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G034200 [exp] 52 / 1e-07 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.003G204100 [exp] 52 / 1e-07 AT1G07740 502 / 2e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G017400 [exp] 52 / 1e-07 AT5G04810 1278 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G264800 [exp] 50 / 6e-07 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.007G134300 [exp] 49 / 6e-07 AT5G09320 114 / 1e-28 Vacuolar sorting protein 9 (VPS9) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10018279 pacid=23179355 polypeptide=Lus10018279 locus=Lus10018279.g ID=Lus10018279.BGIv1.0 annot-version=v1.0 ATGGCCGATTTCGTTGATGAAATCCATGAAAACGACTATGGTGGTATAGCAGGCAGCAAATGGATGACCGGAGCTTACGTGGCTGTCCGGAGGTCCGCAA AGGTTGATCGATGCCGTTGCTGGAGGCTATCTTGCGCACCTAGAGCTTCTGCTGAAGCCTGCAAGCGAATGGGACGTCGCAAAACTCAGCCGAATCCTCT TCTCCAATGCATTCTCCTCTTCCCCTTTCTTTCTCTTCAAAATCACCCGCCGATTGCCGTCTTCTACTTCAGCTCTCCATTTCTGCAATTCCTCCGGAAA AACAATTCACCGTCGTCTCTGGATCCCCAGTCTCTCTCTCACCCATTTCAAGCCGTCTTTGAGCTTGCTAGCAAGGAAGCTAATTCGGTCGAGAGCCTCT CTCAAGTTTATAAAGCTTCCGAAGAGTTGGGAATCCAACTCACGGCCAATTCGGCTGCCATTCTCCTTCGCTGCCTCGGAAGAAACGGGATGATGACTGA TGCTAAGTTCTTCTATGATAGCTTTGATGATTCAGATGTGAAGCCAACTGCTAACACATTCAATGCATTGTTTAGAGGCTTAAGGGAGAATAAGTTAGTT GATAAAGCTTTTGAGTTGATGGATAGAATGATCAAGGAGGGTTGTAACCCTGATTTCATCACGATGGAGATCCTCACGGAGTGGCTTTCTGCTGTTGGTG AAACGGATAAGTTGAGAAGATTTGTTGAAGGCTATCCTGTCTCAGGTGCTGCTGAACTAACATCAGCTGCTGCTTAA
AA sequence Show only first row Show all	>Lus10018279 pacid=23179355 polypeptide=Lus10018279 locus=Lus10018279.g ID=Lus10018279.BGIv1.0 annot-version=v1.0 MADFVDEIHENDYGGIAGSKWMTGAYVAVRRSAKVDRCRCWRLSCAPRASAEACKRMGRRKTQPNPLLQCILLFPFLSLQNHPPIAVFYFSSPFLQFLRK NNSPSSLDPQSLSHPFQAVFELASKEANSVESLSQVYKASEELGIQLTANSAAILLRCLGRNGMMTDAKFFYDSFDDSDVKPTANTFNALFRGLRENKLV DKAFELMDRMIKEGCNPDFITMEILTEWLSAVGETDKLRRFVEGYPVSGAAELTSAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28460			Pentatricopeptide repeat (PPR)...		Lus10018279 [exp]	0	1
AT1G79220			Mitochondrial transcription te...		Lus10031762 [exp]	3.0	0.8671
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10030415 [exp]	4.5	0.8669
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	6.3	0.8457
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10016793 [exp]	9.3	0.7584
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10017243 [exp]	10.2	0.8153
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	10.4	0.8395
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10017032 [exp]	10.4	0.8470
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10028953 [exp]	12.6	0.7989
AT5G27110			Tetratricopeptide repeat (TPR)...		Lus10009702 [exp]	13.2	0.7864
AT3G16610			pentatricopeptide (PPR) repeat...		Lus10035788 [exp]	13.5	0.8380

Compare expression of checked genes

Lus10018279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.