Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45170 412 / 2e-137 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G61680 328 / 2e-102 ATTPS14 terpene synthase 14 (.1.2) AT4G16730 258 / 1e-76 AtTPS02 terpene synthase 02 (.1) AT4G16740 240 / 1e-69 ATTPS03 terpene synthase 03 (.1.2) AT3G25810 226 / 2e-64 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G25830 224 / 2e-63 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 224 / 2e-63 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT2G24210 220 / 4e-62 AtTPS10 terpene synthase 10 (.1) AT5G23960 167 / 9e-44 ATTPS21 terpene synthase 21 (.1.2) AT3G29410 147 / 5e-37 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000231 [exp] 928 / 0 AT1G61680 348 / 8e-115 terpene synthase 14 (.1.2) Lus10018392 [exp] 590 / 0 AT1G61680 350 / 1e-113 terpene synthase 14 (.1.2) Lus10040631 [exp] 572 / 0 AT5G45170 427 / 3e-149 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10035240 [exp] 569 / 0 AT1G61680 372 / 5e-123 terpene synthase 14 (.1.2) Lus10007622 [exp] 380 / 5e-126 AT4G16740 191 / 7e-58 terpene synthase 03 (.1.2) Lus10040632 [exp] 254 / 3e-80 AT1G61680 153 / 2e-44 terpene synthase 14 (.1.2) Lus10018390 [exp] 240 / 8e-70 AT4G16730 330 / 5e-107 terpene synthase 02 (.1) Lus10007624 [exp] 235 / 8e-68 AT4G16740 334 / 8e-108 terpene synthase 03 (.1.2) Lus10031590 [exp] 232 / 1e-66 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G030400 [exp] 414 / 7e-136 AT1G61680 466 / 8e-160 terpene synthase 14 (.1.2) Potri.004G030200 [exp] 410 / 2e-134 AT1G61680 465 / 2e-159 terpene synthase 14 (.1.2) Potri.015G112500 [exp] 403 / 8e-134 AT5G45170 386 / 2e-133 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G032300 [exp] 354 / 6e-114 AT1G61680 350 / 1e-115 terpene synthase 14 (.1.2) Potri.015G085500 [exp] 254 / 5e-75 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.019G023006 [exp] 254 / 1e-74 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G022338 [exp] 254 / 2e-74 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 253 / 2e-74 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.015G032100 [exp] 253 / 2e-74 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.017G041700 [exp] 236 / 8e-68 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10018280 pacid=23179324 polypeptide=Lus10018280 locus=Lus10018280.g ID=Lus10018280.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCCTCATGCAATTCCTCCTTCCCCAAATATACTCAATATTCTTCAGTTAAACATATTAGTAATCCGCAGCTGATGACTACTAACCTCAAGA GATACATGTTGACACCGTCCCTGACAGCTCAGGAGCATGTCATCAATCTTCAGGATCCATTCAGTTTTGCCATTGCCAGCACCACCACGACGGAACGGCG CCATATTACTGATGAGATTACCATCATGATGGAGAATCGCAGCTACAGAATGGAAGAAGCAAGGCTAATGTTTGAGCAAATAATGGAAGAAGGAAAGTCG TCCATGGAAAACTTAGTAATGATAGACTCTCTGCAACGCTTAGGTCTAGATTACTACTTCCAGGAAGATATCTCCGCAGTACTGAAGCAACAGTATTACT ACTACTGTAGTAGTACTATTACAAACCATGATGGTGATGATGATGATCTTCTGGAGACTTCCTTGCGCTTTCGGTTGCTAAGGCAACAAGGTTATCACGT TCCTTCAGACATGTTCCAGAAATTCATAACCCAGAAAGGCAAGTTGGGAGATAATGATATAAGAGGATTGGTCGAACTGTACGAAGCATCGTTCTGGAGT ATAACAGGCGAAAGCATTCTGCACGAAGCCGGACAAGTTAGTGCTGAGATGCTAAGATACTTAAAGGATCACAACATCCTTGCAAATTACACTTTGAGGT GTCCTTTTCATAGAAGCTTGCCCAAATTCTACATTAAGAACTATCTCAACATTTTGCATGGGACACCAATCAAGCACTACTACAACGACACATTTACGGA TCTAGTCAAACTCGAGTTCAACATTAATCAGTACATGCATCGGGAGGAAGTCAACCAAGTTGTAAAGTGGTGGAAGCAGTTAGGACTGGCGGAAGAGTTA AAATTTGCGAGGAACGAGCCAGTGAAGTGGTATATGTGGCCGCTGGCAATCTTAACGGACCCGAAATTCTCTGAAGAAAGAATCGAGCTAACCAAACCTA TTTCATTAGTGTACCTCATAGACGATATCTTCGATATCTACGGACCACTTGATGAACTCATTCTCTTCACTGAAACTGTTACGAGATGGGACATCGCAGC GGCAGAACAATTACCTGACTATATGAACAAGTGCTTCATGGCTCTCCACGAAGTCACCAATCAATTTGGGTACAAAGTGTACAAAACACATGGATACGAT CCAACACACTCTCTACAACAAACATGGGCAAAACTGTTCAAGGCATTTCTAGTTGAAGCCAAATGGTTCCATTCAAGAAAGTGTCCAAAAGCAGAAGAGT ACTTGAAGAATGGGATAATGAGTTCGGGTGTACAATTAGTGCTCATTCACCTCTTCTTCCTCTTGGGTCATGGCCTCACAAAGAGAAATGTGGACCTACT CGACGGTGATAATCCTCCTATTATTTCATCGGTCGCAAAAATTCTTCGGTTATGCGACGATCTTTCAGCAATGGACGAAAAGCAAGACGAGTATGATGGG TCTTATGTGGATTGCTACATGAAGGAGCATCCTGAGTCAACGTTGCATGGTGCGAGGAAGCATGTGATGGAGATGATTGAAGATACGGTCCTTATAGATG CTTATCGCTTGGGGAATCGCCAGGCTTTTAATGTAGCATTCCGGAAGCTGGGGCTTGACTGTGCCAATTGGACTGAACCTATCTACATGGACCTTCTAAG GAAGAGCACCGGTGATGAGGAAAGAATGCTGCTTTTGTATTTTAACCGGATTGGTTGGCCTACCTCTTTGCCAACTAGTGAGAAAGAAACGTTCATGAAA AAAGTTCTTCAAGAAAAGAGAAAAGCACTGGATGAATTTGCGACATCGGAAGGTTCACCTCTGCGACCAGGAGTTGAAGAGTTTGTGGATGATGCATATG ATGAAGGAATACCTGTGGTTATTGTGACAAGTTATAGTAAAAGTGAGGAGAAAGTAGCCAGGTCCATTATAAGCAAACTCGGGCAGTCGAGAATACCCAA GATCAAGATTGTTGGAAACCAGGAAATAGAACAGAGTTTTTATGGACAACTTGTTCTCGGCGAAGGAGTTTCCTCTGGTTTGGATGAGCAACTAGCCAGG GAAGTGAAAAAAGCAGCTTCGGCCGAGAAACAGAGGGTCGCTGAAGAAGTAGCATCGTTACTGAAATTAAAAGTAGAGCTAGATACGAGTTCATCTGAGA GTCTAGATAAGGTGGTAGCCGCGCTACGTGCAGGGGCAGAGACTGCCGGTCTTCCTGTCCAAAATTGTGTCCTAATTAGCGGAAACCAATCTGGAGTTGC TGCAGCCAATCGAATCGGCATGCCATGCGTAGTTGTGCGGAGCAGTTCGACAGCTAGAGCTGAGTTCCCTTTAACAAATGGAATCATGGACGGGTTTGGA GGTGCAGATTTGACAGTTTCTAAACTGCGAAAGAAGCGATGGTCAGGCTCTCAAGAGGTGTAA
AA sequence Show only first row Show all	>Lus10018280 pacid=23179324 polypeptide=Lus10018280 locus=Lus10018280.g ID=Lus10018280.BGIv1.0 annot-version=v1.0 MAASSCNSSFPKYTQYSSVKHISNPQLMTTNLKRYMLTPSLTAQEHVINLQDPFSFAIASTTTTERRHITDEITIMMENRSYRMEEARLMFEQIMEEGKS SMENLVMIDSLQRLGLDYYFQEDISAVLKQQYYYYCSSTITNHDGDDDDLLETSLRFRLLRQQGYHVPSDMFQKFITQKGKLGDNDIRGLVELYEASFWS ITGESILHEAGQVSAEMLRYLKDHNILANYTLRCPFHRSLPKFYIKNYLNILHGTPIKHYYNDTFTDLVKLEFNINQYMHREEVNQVVKWWKQLGLAEEL KFARNEPVKWYMWPLAILTDPKFSEERIELTKPISLVYLIDDIFDIYGPLDELILFTETVTRWDIAAAEQLPDYMNKCFMALHEVTNQFGYKVYKTHGYD PTHSLQQTWAKLFKAFLVEAKWFHSRKCPKAEEYLKNGIMSSGVQLVLIHLFFLLGHGLTKRNVDLLDGDNPPIISSVAKILRLCDDLSAMDEKQDEYDG SYVDCYMKEHPESTLHGARKHVMEMIEDTVLIDAYRLGNRQAFNVAFRKLGLDCANWTEPIYMDLLRKSTGDEERMLLLYFNRIGWPTSLPTSEKETFMK KVLQEKRKALDEFATSEGSPLRPGVEEFVDDAYDEGIPVVIVTSYSKSEEKVARSIISKLGQSRIPKIKIVGNQEIEQSFYGQLVLGEGVSSGLDEQLAR EVKKAASAEKQRVAEEVASLLKLKVELDTSSSESLDKVVAALRAGAETAGLPVQNCVLISGNQSGVAAANRIGMPCVVVRSSSTARAEFPLTNGIMDGFG GADLTVSKLRKKRWSGSQEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45170			Haloacid dehalogenase-like hyd...		Lus10018280 [exp]	0	1
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10035875 [exp]	2.4	0.9335
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10000231 [exp]	6.3	0.8895
AT1G44000			unknown protein		Lus10029738 [exp]	7.7	0.8887
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031716 [exp]	7.9	0.8847
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017718 [exp]	8.0	0.8935
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10025787 [exp]	8.4	0.8985
AT2G46915			Protein of unknown function (D...		Lus10010092 [exp]	8.5	0.8248
AT5G35970			P-loop containing nucleoside t...		Lus10024974 [exp]	8.7	0.8964
AT3G18430			Calcium-binding EF-hand family...		Lus10029670 [exp]	12.8	0.8811
AT1G33100			MATE efflux family protein (.1...		Lus10005685 [exp]	13.0	0.8707

Compare expression of checked genes

Lus10018280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.