Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45160 247 / 2e-76 Root hair defective 3 GTP-binding protein (RHD3) (.1) AT3G13870 207 / 4e-62 GOM8, RHD3 GOLGI MUTANT 8, Root hair defective 3 GTP-binding protein (RHD3) (.1), Root hair defective 3 GTP-binding protein (RHD3) (.2) AT1G72960 203 / 1e-60 Root hair defective 3 GTP-binding protein (RHD3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040630 [exp] 372 / 2e-124 AT5G45160 1221 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10036195 [exp] 273 / 3e-86 AT5G45160 1216 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10038333 [exp] 271 / 9e-86 AT5G45160 1217 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10037641 [exp] 199 / 9e-59 AT1G72960 1108 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10018282 [exp] 171 / 3e-49 AT5G45160 1055 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10015623 [exp] 47 / 6e-06 AT1G72970 777 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G112700 [exp] 243 / 4e-75 AT5G45160 1161 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.003G038900 [exp] 216 / 2e-65 AT3G13870 1220 / 0.0 GOLGI MUTANT 8, Root hair defective 3 GTP-binding protein (RHD3) (.1), Root hair defective 3 GTP-binding protein (RHD3) (.2) Potri.001G201000 [exp] 213 / 5e-64 AT1G72960 1204 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116000 [exp] 96 / 1e-22 AT5G45160 671 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.015G112600 [exp] 94 / 6e-22 AT5G45160 717 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116130 [exp] 84 / 2e-18 AT5G45160 707 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116210 [exp] 76 / 2e-15 AT5G45160 719 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116700 [exp] 71 / 8e-14 AT5G45160 727 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G117300 [exp] 53 / 6e-08 AT5G45160 620 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF05879 [flax] [poplar] RHD3 Root hair defective 3 GTP-binding protein (RHD3)
Representative CDS sequence Show only first row Show all	>Lus10018281 pacid=23179283 polypeptide=Lus10018281 locus=Lus10018281.g ID=Lus10018281.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCACGTTTGGATGAAAAAACAGATAAAATTGAAAACTTACTTGTTTCCTCCCTAATGGATGGAACTATGGTTGCGCAATCTTCACAAAACA GAGGTGTAGGAACTTCTGCAGACCTTCTTGCATCAAGTACCTGGGAAGAGGTTTCTCCAAAAGATACTCTGATCACACCAGTTCAGTGCAAGTCTTTGTG GAGGCAGTTCAAAGCAGAGACAGAGTACACAGTTACTCAAGCGATCTCCGCTCAGGATGCTCACAAACGTAATAACAACTGGTTACCTCCTCCATGGGCT ATTGCTGCAATGCTCATCCTTGGTTTCAACGAGCTCATGCTTCTATTAAAGAACCCACTTTATCTGATGGTCCTCTTCGTAGCGTACTTACTTTTCAAGG CCCTATGGGTACAACTGGACGTTGCTGGGCAGTTCCGACACGGCGCTGTGGCTGGGATACTGTCTATCTCATCCAAGTTTGTTCCTACCATCATGAATCT TCTGAAGCGACTTGCTGAAGAGGCTCAAGGTCCTGGTCAAGGTCAAGGTCAAGGTGAAGTTCAAATGGCTACGATCCCAAGACCACAGTCTAGCTCGAAT CCAACTTCGTCGGTATCCTCCAATATCTCATCAGTGTCTGATAATGGGATGGAGTACTCAAGCCCAAACCAGATGCATAGGCGAAGTACCAGAGCTTCGG AAGTAGAGGCAGAGCAATACTGA
AA sequence Show only first row Show all	>Lus10018281 pacid=23179283 polypeptide=Lus10018281 locus=Lus10018281.g ID=Lus10018281.BGIv1.0 annot-version=v1.0 MAAARLDEKTDKIENLLVSSLMDGTMVAQSSQNRGVGTSADLLASSTWEEVSPKDTLITPVQCKSLWRQFKAETEYTVTQAISAQDAHKRNNNWLPPPWA IAAMLILGFNELMLLLKNPLYLMVLFVAYLLFKALWVQLDVAGQFRHGAVAGILSISSKFVPTIMNLLKRLAEEAQGPGQGQGQGEVQMATIPRPQSSSN PTSSVSSNISSVSDNGMEYSSPNQMHRRSTRASEVEAEQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45160			Root hair defective 3 GTP-bind...		Lus10018281 [exp]	0	1
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10031436 [exp]	5.9	0.7302
AT1G58170			Disease resistance-responsive ...		Lus10016237 [exp]	12.2	0.6937
AT3G51580			unknown protein		Lus10025224 [exp]	13.0	0.7147
AT3G51580			unknown protein		Lus10025140 [exp]	13.2	0.7301
AT3G01690			alpha/beta-Hydrolases superfam...		Lus10000544 [exp]	16.5	0.7080
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10014732 [exp]	24.0	0.6909
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Lus10027536 [exp]	24.2	0.6795
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Lus10040002 [exp]	36.7	0.6921
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Lus10039293 [exp]	45.4	0.6693
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Lus10005352 [exp]	45.8	0.6799

Compare expression of checked genes

Lus10018281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.