Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72370 400 / 2e-141 AP40, RPSAA, RP40, P40 40s ribosomal protein SA (.1.2) AT3G04770 387 / 2e-136 RPSAB 40s ribosomal protein SA B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040626 [exp] 495 / 6e-179 AT3G04770 421 / 5e-150 40s ribosomal protein SA B (.1.2) Lus10013183 [exp] 411 / 1e-145 AT3G04770 424 / 7e-151 40s ribosomal protein SA B (.1.2) Lus10037445 [exp] 409 / 9e-145 AT3G04770 413 / 9e-147 40s ribosomal protein SA B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G112900 [exp] 408 / 2e-144 AT3G04770 399 / 6e-141 40s ribosomal protein SA B (.1.2) Potri.003G071200 [exp] 402 / 5e-142 AT1G72370 384 / 1e-134 40s ribosomal protein SA (.1.2) Potri.001G164000 [exp] 401 / 1e-141 AT1G72370 386 / 9e-136 40s ribosomal protein SA (.1.2) Potri.012G117600 [exp] 399 / 8e-141 AT3G04770 393 / 1e-138 40s ribosomal protein SA B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0067 [flax] [poplar] SIS PF00318 [flax] [poplar] Ribosomal_S2 Ribosomal protein S2
Representative CDS sequence Show only first row Show all	>Lus10018284 pacid=23179271 polypeptide=Lus10018284 locus=Lus10018284.g ID=Lus10018284.BGIv1.0 annot-version=v1.0 ATGGAGACAGCTACCGGAGCAGCGCCGCCGAGGCACCTATCTGATAAGGAAGCCGGCATTCAGCTGATGGTGGCCTCCGAAGTCCACCTCGGCACCAAAA ACTGCGACTTCCAGATGGAACGCTACGTCTTCAAGCGCCGCAACGACGGTATTCACATAATCAACCTTGGCAAGACGTGGGAGAAGCTTCAGCTGGCTGC CAGGGTTATCGCTGCGATTGAGAATCCGCAAGATATCATTGTTCAGTCAGCGAGGCCATATGGACAGAGAGCTGTCCTGAAATTCGCTCAGTACACTGGC GCCAACGCCATTGCTGGAAGGCACACACCTGGTACCTTCACCAACCAGATGCAAACTTCCTTCAGTGAGCCTCGTTTGCTAATCCTTACTGACCCTAGGA CTGACCATCAGCCAATTAAGGAAGGATCCCTTGGAAACATTCCAGTCATTGCTTTCTGTGACACGGATTCTCCAATGAGGTATGTGGACATTGGTATTCC TGCCAATAACAAGGGAAGGCACAGCATTGGATGCCTATTCTGGCTCTTGGCAAGGATGGTTCTTCAAATGCGTGGCACAATCCCTCAAGGCCACAAATGG GATGTGATGGTGGACTTGTTCTTCTACAGGGAGCCAGAAGAAGCCAAGAAAGGAGAAGATGAGGAAGCAGTTGCTGCAATTGAATACGGTCTTCCTCAGC CGGACTACAATATGTCTGCTGGCGCTGACAACTGGAACTCGCCAGCTGATGCTGGCTGGACTGACATGGCTGCCCAAACCATTGCTGCAGCCCCTGCAGC AAACATCGCCCCAGATCAAGGATGGGATGCTGCAGTTCCCCCTCCGCAAGTTGCAAGCATAGGTGCTGTGTAG
AA sequence Show only first row Show all	>Lus10018284 pacid=23179271 polypeptide=Lus10018284 locus=Lus10018284.g ID=Lus10018284.BGIv1.0 annot-version=v1.0 METATGAAPPRHLSDKEAGIQLMVASEVHLGTKNCDFQMERYVFKRRNDGIHIINLGKTWEKLQLAARVIAAIENPQDIIVQSARPYGQRAVLKFAQYTG ANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGSLGNIPVIAFCDTDSPMRYVDIGIPANNKGRHSIGCLFWLLARMVLQMRGTIPQGHKW DVMVDLFFYREPEEAKKGEDEEAVAAIEYGLPQPDYNMSAGADNWNSPADAGWTDMAAQTIAAAPAANIAPDQGWDAAVPPPQVASIGAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10018284 [exp]	0	1
AT4G02930			GTP binding Elongation factor ...		Lus10008161 [exp]	1.4	0.9479
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10010202 [exp]	4.0	0.9261
AT5G05520			Outer membrane OMP85 family pr...		Lus10007514 [exp]	5.7	0.9203
AT2G18330			AAA-type ATPase family protein...		Lus10028305 [exp]	5.9	0.9188
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10004649 [exp]	6.0	0.9229
AT4G20980			Eukaryotic translation initiat...		Lus10011171 [exp]	6.0	0.9190
AT2G44640			unknown protein		Lus10019499 [exp]	6.6	0.9117
AT5G48760			Ribosomal protein L13 family p...		Lus10043151 [exp]	7.4	0.9202
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10032268 [exp]	8.4	0.9130
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10017403 [exp]	11.2	0.9139

Compare expression of checked genes

Lus10018284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.