Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45120 503 / 1e-175 Eukaryotic aspartyl protease family protein (.1) AT3G52500 143 / 3e-37 Eukaryotic aspartyl protease family protein (.1) AT3G25700 132 / 1e-33 Eukaryotic aspartyl protease family protein (.1.2) AT4G16563 127 / 1e-31 Eukaryotic aspartyl protease family protein (.1) AT2G03200 109 / 2e-25 Eukaryotic aspartyl protease family protein (.1) AT3G54400 108 / 3e-25 Eukaryotic aspartyl protease family protein (.1) AT3G02740 99 / 4e-22 Eukaryotic aspartyl protease family protein (.1) AT3G59080 99 / 7e-22 Eukaryotic aspartyl protease family protein (.1.2) AT4G30040 96 / 3e-21 Eukaryotic aspartyl protease family protein (.1) AT1G09750 95 / 8e-21 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040624 [exp] 365 / 2e-125 AT5G45120 222 / 3e-70 Eukaryotic aspartyl protease family protein (.1) Lus10040623 [exp] 241 / 1e-77 AT5G45120 146 / 6e-42 Eukaryotic aspartyl protease family protein (.1) Lus10000725 [exp] 175 / 1e-48 AT4G16563 508 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Lus10007466 [exp] 172 / 9e-48 AT4G16563 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10008513 [exp] 168 / 6e-46 AT4G16563 493 / 7e-172 Eukaryotic aspartyl protease family protein (.1) Lus10028941 [exp] 160 / 6e-43 AT4G16563 489 / 2e-169 Eukaryotic aspartyl protease family protein (.1) Lus10029408 [exp] 140 / 2e-36 AT3G52500 466 / 5e-162 Eukaryotic aspartyl protease family protein (.1) Lus10004204 [exp] 138 / 2e-35 AT3G52500 457 / 2e-158 Eukaryotic aspartyl protease family protein (.1) Lus10041494 [exp] 132 / 1e-33 AT3G25700 559 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G118000 [exp] 512 / 3e-179 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 491 / 4e-171 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G076300 [exp] 175 / 9e-49 AT4G16563 484 / 2e-168 Eukaryotic aspartyl protease family protein (.1) Potri.001G158600 [exp] 172 / 9e-48 AT4G16563 494 / 5e-172 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 166 / 2e-45 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.009G162400 [exp] 160 / 1e-43 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) Potri.016G071900 [exp] 159 / 5e-43 AT3G52500 491 / 8e-172 Eukaryotic aspartyl protease family protein (.1) Potri.008G115900 [exp] 129 / 2e-32 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.001G306200 [exp] 117 / 3e-28 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 113 / 4e-27 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10018286 pacid=23179340 polypeptide=Lus10018286 locus=Lus10018286.g ID=Lus10018286.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTCATCATCATCATCATCACAACCTTCTTCCTACTACTCAATGCCTTCACATTTTTACCAATCCATTCCCAAAATACCCCTCCAACCTCAC TTATTCTACGCCTCACCCTCTCCAAAACCTCCCTCCCGCCACCCGAAAAACAACCCAAAACCATATCATCCACCCAAACGACGTCGTCGAGCACAATAAC GGCGCCGTTGAGATCGATCCGAGACGGATACCTCATCCCTTTAAACATAGGCACTCCACCTCAGCAAGTCCAAGTCTACCTGGACACAGGCAGCGACCTC ACCTGGGTCCCATGTGGCAACCTCACCTTTGACTGCATTGACTGCGACGACTACTACAAGTCAACCCTCGCCCCCAAATCCTTCGGCAGCTTCACTCCTT CCCTTTCCTCCACCTCGTATCGTGACACGTGCGGCAGCCGGTTCTGTTCCGATGTCCACAGCTCCGACAGCTCCCTTGATCCTTGCATTGTCTCCGGCTG CTCGTTGACCACCGTCGTTAAGTCAACGTGTCCTCGCCCTTGCCCTTCATTTGCCTACACTTATGGGGCCAGTGGGGTCGTCGCGGGGTCCCTCACTCGG GACACGCTTCATGTCCACGTCAGCAACAATAGTGGTAATAAGGAAGTTCAGAAGTTCTGCTTCGGGTGTGTGGGGTCAACGTACCGCGAGCCGATTGGGA TAGCAGGGTTTGGAAAGGGCCCACTCTCCTTGCCATCCCAACTAGGGTTTGATGGGAAGGAAGGGTTTTCACATTGTTTCTTGCTTTTCAAGTATGCAAA CAACCCTAACGTGTCTAGCACGTTACTTGTGAGAGAAGCTTCCCTTTTCTTCAGAGAAGGGATGCACTTCACTCCGATGTTAAGCTCCTCCGTGTTCCCT AATTATTACTATGTAGGCTTGGAGGCCATTTCTATAGTGGGCACCAACACCACTGCACCATCAGCCTCGAGTAGTAATACTGGTGGTGTTGTGGTGGGCC CGGACGTGCCCTTGAGAATGAGAGAATTTGATTCTCGAGGGAATGGAGGAATGTTGATCGACTCAGGAACCACTTACACTCACCTTCCTGAACCGTTTTA CTCCGATCTTTTAACCATGCTCCGGTCCGTGATCTGGTACCCGAGGGCTACTGCTGACGTGGAGGAGAGGGTAGGGTTTGATCTTTGTTACAGGGTTCCA ATATCAAACGTTAGTAATAGTATTGGTGAGGTTGTTGGGTCGGGGTTTCCAGGGGTGACGTTTCATTTCATGAACAATGCGAGCGTGGCGGTGGGGGAGG AGAATCTGTTTCAGGCAGTGGAGACGGCGAGGAACGGGACGGTGGTGAAGTGTCTGATGATGGAGAGTATGGAGGAGGAGGAAGAAGGTGACGGACCGGC GGGAGTGTTTGGGAGCTTCCAGCAGCAGAATGTAGAGGTTGTTTATGACTTGGACAAGGAAAGGATTGGGTTTCGAGCTATGGACTGTGCTTCCCAGGGG CTCTTTCACGATGAAATGACAAAGCAGTGA
AA sequence Show only first row Show all	>Lus10018286 pacid=23179340 polypeptide=Lus10018286 locus=Lus10018286.g ID=Lus10018286.BGIv1.0 annot-version=v1.0 MASLIIIIITTFFLLLNAFTFLPIHSQNTPPTSLILRLTLSKTSLPPPEKQPKTISSTQTTSSSTITAPLRSIRDGYLIPLNIGTPPQQVQVYLDTGSDL TWVPCGNLTFDCIDCDDYYKSTLAPKSFGSFTPSLSSTSYRDTCGSRFCSDVHSSDSSLDPCIVSGCSLTTVVKSTCPRPCPSFAYTYGASGVVAGSLTR DTLHVHVSNNSGNKEVQKFCFGCVGSTYREPIGIAGFGKGPLSLPSQLGFDGKEGFSHCFLLFKYANNPNVSSTLLVREASLFFREGMHFTPMLSSSVFP NYYYVGLEAISIVGTNTTAPSASSSNTGGVVVGPDVPLRMREFDSRGNGGMLIDSGTTYTHLPEPFYSDLLTMLRSVIWYPRATADVEERVGFDLCYRVP ISNVSNSIGEVVGSGFPGVTFHFMNNASVAVGEENLFQAVETARNGTVVKCLMMESMEEEEEGDGPAGVFGSFQQQNVEVVYDLDKERIGFRAMDCASQG LFHDEMTKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45120			Eukaryotic aspartyl protease f...		Lus10018286 [exp]	0	1
AT5G54370			Late embryogenesis abundant (L...		Lus10038588 [exp]	2.8	0.9593
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10034703 [exp]	4.2	0.9519
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10011123 [exp]	6.0	0.9328
AT5G54370			Late embryogenesis abundant (L...		Lus10037886 [exp]	6.8	0.9570
AT1G50720			Stigma-specific Stig1 family p...		Lus10011146 [exp]	9.7	0.9476
AT5G54370			Late embryogenesis abundant (L...		Lus10020169 [exp]	9.8	0.9484
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10012817 [exp]	12.6	0.9178
AT5G44390			FAD-binding Berberine family p...		Lus10026775 [exp]	13.3	0.9251
AT1G06330			Heavy metal transport/detoxifi...		Lus10020704 [exp]	13.6	0.9250
AT5G60520			Late embryogenesis abundant (L...		Lus10031532 [exp]	13.9	0.9463

Compare expression of checked genes

Lus10018286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.