Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31300 361 / 2e-126 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) AT4G19645 355 / 2e-124 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) AT4G10360 220 / 4e-71 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038335 [exp] 501 / 0 AT1G31300 375 / 3e-132 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10036199 [exp] 499 / 0 AT4G19645 379 / 6e-134 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10040622 [exp] 483 / 3e-174 AT1G31300 336 / 4e-116 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10034433 [exp] 219 / 6e-71 AT4G10360 321 / 3e-111 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10019130 [exp] 218 / 2e-70 AT4G10360 315 / 7e-109 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G113200 [exp] 419 / 2e-149 AT1G31300 406 / 3e-144 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.012G118100 [exp] 418 / 4e-149 AT1G31300 349 / 7e-122 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.005G206000 [exp] 343 / 1e-119 AT1G31300 348 / 2e-121 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.002G056600 [exp] 339 / 5e-118 AT4G19645 352 / 4e-123 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.019G133500 [exp] 221 / 9e-72 AT4G10360 281 / 2e-95 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [flax] [poplar] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Lus10018287 pacid=23179270 polypeptide=Lus10018287 locus=Lus10018287.g ID=Lus10018287.BGIv1.0 annot-version=v1.0 ATGGTGCCTGTACCTAAGGAAACAGTTATGGCAATAGAGGCTTACCGCAGTCAGGCTCAAGTGCTGGTTAAGAGTTACTTATTTGCTGACCCTTTTGTTC CATACACTTCTGTTCTCGGAGGCGTAGTCGCTTGCAAAGTGATCTATGACATAACTCAGTTGATTAGCACGTTTTACATCAAGACATACAATGGGCTTAC AAGAATACAGAGAATCGAGTGGAACAATCGGGGCATGTCTTCATTACACGCGATCTTTATAACAGCTTTGTCGTTGTACTTTGTATTCTGGTCTGATCTA TTTTCTGACAAACCAAATGCCGGATATGTTACTCTACGAAGCTCACCATTATCCATATTTGGATTGGCTGTTTCGGTTGGATACTTCATTGCAGATCTTG GGATGATTTTTTGGTTTTATCCTTCTTTAGGTGGGATGGAATATGTTGTTCATCATTGTCTTTCTGCGATAGCAGTAGGATACTCTATGTTGTCTGGGGA AGGGCAGTTATATACATACATGTGCCTCATCTCGGAAGTCACTACACCTGAGATAAACATGAGATGGTATCTTGACATATCAGGCATGAAACGGTCAACT GCGTATGTTGTAAATGGTGTACTGATCTTCATCTTTTGGTTGATTGCCAGAGTCTTGTTGTTCTTTTACATCTTCTACCACATCAACATGCACTTTGATC AGGTTGTTCAAATGATGTGGTTTGGGTGTGTGGTTGTTGTGCTGGTGCCATCAACATTGTTTATAATGAACTTGATGTGGTTCTCCAAGATCATCAAGGG CTTGTTGAAAATTCTAGCCAAGAGGCAGTGA
AA sequence Show only first row Show all	>Lus10018287 pacid=23179270 polypeptide=Lus10018287 locus=Lus10018287.g ID=Lus10018287.BGIv1.0 annot-version=v1.0 MVPVPKETVMAIEAYRSQAQVLVKSYLFADPFVPYTSVLGGVVACKVIYDITQLISTFYIKTYNGLTRIQRIEWNNRGMSSLHAIFITALSLYFVFWSDL FSDKPNAGYVTLRSSPLSIFGLAVSVGYFIADLGMIFWFYPSLGGMEYVVHHCLSAIAVGYSMLSGEGQLYTYMCLISEVTTPEINMRWYLDISGMKRST AYVVNGVLIFIFWLIARVLLFFYIFYHINMHFDQVVQMMWFGCVVVVLVPSTLFIMNLMWFSKIIKGLLKILAKRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10018287 [exp]	0	1
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10038744 [exp]	1.4	0.8985
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10003047 [exp]	3.5	0.8737
AT5G35460			unknown protein		Lus10021569 [exp]	4.2	0.8802
AT1G31940			unknown protein		Lus10012117 [exp]	4.7	0.8943
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10002725 [exp]	5.8	0.8394
AT1G08800			Protein of unknown function, D...		Lus10005527 [exp]	6.1	0.8239
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10001021 [exp]	7.7	0.8707
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10005206 [exp]	8.1	0.8442
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10021900 [exp]	8.7	0.7947
AT5G32440			Ubiquitin system component Cue...		Lus10039988 [exp]	10.6	0.8433

Compare expression of checked genes

Lus10018287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.