Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45110 596 / 0 ATNPR3, NPR3 NPR1-like protein 3 (.1) AT4G19660 568 / 0 ATNPR4, NPR4 NPR1-like protein 4 (.1) AT1G64280 342 / 3e-110 SAI1, NIM1, NPR1, ATNPR1 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) AT4G26120 335 / 1e-107 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) AT3G57130 157 / 8e-42 BOP1 BLADE ON PETIOLE 1, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1.2) AT2G41370 151 / 1e-39 BOP2 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) AT5G66055 46 / 7e-05 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040620 [exp] 1000 / 0 AT5G45110 647 / 0.0 NPR1-like protein 3 (.1) Lus10038337 [exp] 758 / 0 AT5G45110 575 / 0.0 NPR1-like protein 3 (.1) Lus10036200 [exp] 633 / 0 AT5G45110 489 / 6e-168 NPR1-like protein 3 (.1) Lus10018756 [exp] 392 / 2e-126 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Lus10024842 [exp] 274 / 3e-86 AT4G26120 316 / 7e-103 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10035413 [exp] 134 / 2e-33 AT2G41370 699 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10031017 [exp] 127 / 4e-31 AT2G41370 701 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10024843 [exp] 52 / 1e-07 AT4G26120 94 / 2e-23 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G118500 [exp] 763 / 0 AT5G45110 644 / 0.0 NPR1-like protein 3 (.1) Potri.015G117200 [exp] 763 / 0 AT5G45110 656 / 0.0 NPR1-like protein 3 (.1) Potri.012G118300 [exp] 706 / 0 AT5G45110 566 / 0.0 NPR1-like protein 3 (.1) Potri.002G056500 [exp] 629 / 0 AT5G45110 518 / 1e-178 NPR1-like protein 3 (.1) Potri.005G206100 [exp] 622 / 0 AT5G45110 531 / 0.0 NPR1-like protein 3 (.1) Potri.006G148100 [exp] 416 / 4e-139 AT1G64280 596 / 0.0 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Potri.015G116900 [exp] 247 / 3e-79 AT5G45110 169 / 3e-50 NPR1-like protein 3 (.1) Potri.006G043400 [exp] 157 / 1e-41 AT2G41370 671 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Potri.015G113466 [exp] 141 / 4e-40 AT5G45110 99 / 1e-25 NPR1-like protein 3 (.1) Potri.016G040500 [exp] 147 / 3e-38 AT2G41370 639 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF12313 [flax] [poplar] NPR1_like_C NPR1/NIM1 like defence protein C terminal CL0465 [flax] [poplar] Ank PF11900 [flax] [poplar] DUF3420 Domain of unknown function (DUF3420)
Representative CDS sequence Show only first row Show all	>Lus10018289 pacid=23179301 polypeptide=Lus10018289 locus=Lus10018289.g ID=Lus10018289.BGIv1.0 annot-version=v1.0 ATGGCTAATTTTTCGGAGCCATCGTCGTCTCTGAGTTTTACTTCCTCGTCTCATCTCTCCAACGGCTCAATTACTCACAACAACTTACCAAACTCGCCGG TCTCCGAAGCTACTCCAAGCCTTGATGTGAGTAGTTTGACCAAGCTTAGCTTGAACCTAGAGTCACTCTTGACTGATTCTTCCATTGGTGATTATAGTGA TGCTGAGATAGTTGTTGAAGGTGTATCAGTTGGTGTTCATCGCTGTATTCTAGCTGTGAGGAGTAAGTTCTTCCATGAGTTGTTTAAGAAGGGGGATAAT AAAGGGAAGGATGGGAAACCAAAGTATATTATGAAGGATATGTTGCCTTATGGGAAGATTGGATATGAAGCTTTTCTCATCTTCTTGAGCTACTTGTATA CTGGGAAACTGAAGCCTTTTCCAATGGAGGTTTCGACTTGTGTCCATACTCCTTGTGCTCATGATGCCTGTAGACCAGCTATTAATTTTGCTGTGGAGTT GATGTATGCCTCCTCCATCTTTCAGTTGCCGGAGCTCGTTTCGCTTTTCCAGAGGCGCCTCCATAACTTCGTCGACAAGGCACTTGTAGAAGATGTGGTT CCAATCCTCGTGGCCGCATCCCATTGTCAGTCAGCTCAGCTCGTCGCTCAATGCGTAGACAGAGTAGCACGCTCTGATGTAGACAATGTATGTATAGAGA AGGAGTTGCCCTACGAGGTGGCCGAGAAAGTGAAATTAGTTCGTCGCAAACCCATCAGCTCCGACGAAGAGGAGAGTGTGGATGTCGCCGATGACCCCGC ACGCGAAAAGCAAATCAAAAGAATACACAGGGCTTTGGACTCCGACGATGTGGAGCTAGTGAATCTTCTCCTGACAGAATCTGACGTAACTTTAGACGAT GCTTATGCTATCCATTATGCAGCGGCCTACTGCGATCCGAAGGTTGTCCAGGAGGTGCTTAACCTCCGCCTCGCTGATGTCAACCGTAGAGATTCTCGAG GCTATACGGTTCTTCACATTGCTGCGATGAGAAGGGAGCCGTCCGTGCTGGTGTCCTTGTTGGAGAAAGGGGCTTGTGCTTCGGAGACGACTCAAGATGG ACAGACTGCGGTTAGTATTTGTAGGAGGTTAACGAGGCCGAAAGATTATCATTCAAAAACCGAGCAAGGGCAGGAGGCGAATAAAGATAAGATATGCATT GAGGTTTTGGAAAGAGAGATGAGGAGGAATCCAATGACTCAGAATATCACTGCAACTCCCCATACACCAGATGAGGATCTTCACATGAAGCTTTTGTACC TCGAGAACCGAGTGGCATTCGCAAGGTTGTTCTTTCCAACTGAAGCCAAGCTAGCGATGGACATAGCGAATGCCGACACAACACCTGAGTTTGCTGGCCT CGCTCCATCGAAAGGCTCCAGTGGGAATCTGAGGGAAGTTGACCTAAATGAGACACCAGTAATGCAGAAGAGAAGACTTCTTGTCCGGTTGGAAGCTCTT AAGAAAACAGTGGAAACTGGGCGACGATTCTTCCCCAATTGCTCGGAAGTGCTCGATAAGTTCATGGAGGACGACCTGCCCGATGTGTTCTTTCTCGAGA AGGGCACCCCTGACGAACAACGATTGAAGAGGAATCGTTACGTGGAGCTGAAAGATGATGTCCACAAGGCGTTTACAAAAGACAAAGCAGTGAATCGTAA CGTTTTATCACCTTCTTCGTCCTCAGCGGCTTCACAGAGGGATGGTGGTAACAAAAGGCTCAGAAAGTTCTGA
AA sequence Show only first row Show all	>Lus10018289 pacid=23179301 polypeptide=Lus10018289 locus=Lus10018289.g ID=Lus10018289.BGIv1.0 annot-version=v1.0 MANFSEPSSSLSFTSSSHLSNGSITHNNLPNSPVSEATPSLDVSSLTKLSLNLESLLTDSSIGDYSDAEIVVEGVSVGVHRCILAVRSKFFHELFKKGDN KGKDGKPKYIMKDMLPYGKIGYEAFLIFLSYLYTGKLKPFPMEVSTCVHTPCAHDACRPAINFAVELMYASSIFQLPELVSLFQRRLHNFVDKALVEDVV PILVAASHCQSAQLVAQCVDRVARSDVDNVCIEKELPYEVAEKVKLVRRKPISSDEEESVDVADDPAREKQIKRIHRALDSDDVELVNLLLTESDVTLDD AYAIHYAAAYCDPKVVQEVLNLRLADVNRRDSRGYTVLHIAAMRREPSVLVSLLEKGACASETTQDGQTAVSICRRLTRPKDYHSKTEQGQEANKDKICI EVLEREMRRNPMTQNITATPHTPDEDLHMKLLYLENRVAFARLFFPTEAKLAMDIANADTTPEFAGLAPSKGSSGNLREVDLNETPVMQKRRLLVRLEAL KKTVETGRRFFPNCSEVLDKFMEDDLPDVFFLEKGTPDEQRLKRNRYVELKDDVHKAFTKDKAVNRNVLSPSSSSAASQRDGGNKRLRKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10018289 [exp]	0	1
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Lus10034601 [exp]	1.4	0.9357
AT1G34750			Protein phosphatase 2C family ...		Lus10033453 [exp]	2.8	0.9199
AT4G31410			Protein of unknown function (D...		Lus10026950 [exp]	4.9	0.9081
AT1G04555			unknown protein		Lus10014458 [exp]	5.1	0.9295
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10038337 [exp]	8.5	0.8879
AT3G28630			Protein of unknown function (D...		Lus10015346 [exp]	9.2	0.9000
AT1G14740			Protein of unknown function (D...		Lus10030769 [exp]	9.5	0.9200
AT5G62570			Calmodulin binding protein-lik...		Lus10043463 [exp]	10.6	0.9088
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	10.7	0.9187
					Lus10007750 [exp]	10.7	0.8967

Compare expression of checked genes

Lus10018289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.