Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31280 883 / 0 AGO2 argonaute 2, Argonaute family protein (.1) AT1G31290 805 / 0 AGO3 ARGONAUTE 3 (.1) AT1G69440 529 / 8e-172 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT1G48410 478 / 8e-152 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT5G43810 463 / 1e-146 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT2G27880 449 / 3e-141 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT2G27040 330 / 8e-98 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT5G21150 328 / 2e-97 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT2G32940 286 / 2e-82 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT5G21030 258 / 1e-72 PAZ domain-containing protein / piwi domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040619 [exp] 1761 / 0 AT1G31280 923 / 0.0 argonaute 2, Argonaute family protein (.1) Lus10037136 [exp] 564 / 0 AT1G69440 1267 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036795 [exp] 562 / 0 AT1G69440 1248 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036794 [exp] 561 / 0 AT1G69440 1251 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10031331 [exp] 473 / 2e-149 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10039386 [exp] 460 / 6e-147 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10006627 [exp] 461 / 8e-146 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10017983 [exp] 457 / 2e-142 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10041978 [exp] 452 / 1e-140 AT1G48410 1579 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G118700 [exp] 1113 / 0 AT1G31280 910 / 0.0 argonaute 2, Argonaute family protein (.1) Potri.010G163800 [exp] 564 / 0 AT1G69440 1304 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Potri.015G117350 [exp] 541 / 0 AT1G31280 466 / 2e-156 argonaute 2, Argonaute family protein (.1) Potri.015G117401 [exp] 476 / 1e-156 AT1G31280 405 / 5e-130 argonaute 2, Argonaute family protein (.1) Potri.008G158800 [exp] 473 / 2e-150 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.010G081300 [exp] 471 / 1e-149 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.012G037100 [exp] 470 / 8e-149 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.015G029000 [exp] 464 / 2e-146 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.006G118600 [exp] 449 / 2e-142 AT2G27880 1068 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.009G001500 [exp] 442 / 6e-139 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0219 [flax] [poplar] RNase_H PF02171 [flax] [poplar] Piwi Piwi domain CL0219 [flax] [poplar] PF08699 [flax] [poplar] ArgoL1 Argonaute linker 1 domain
Representative CDS sequence Show only first row Show all	>Lus10018290 pacid=23179278 polypeptide=Lus10018290 locus=Lus10018290.g ID=Lus10018290.BGIv1.0 annot-version=v1.0 ATGGAGGGTGAAGGGTATCAGCAGAAACTCAGAGGCGGCGGCGGTTGTCAGCGAGGAAGAGGATGGCAAAAAGGTAATTTTGGTGGCAACGGTCAGTATC AACCGGAGTTTAATTGGGACGATGGTCATCGGAGTCAAGGCCATTTGGGCCCCACTCGTGGTAGAGGCAGAGGAGGAGGAGGAGGAGCAATGCCGCCGAT CAACGGCGGTTGGGAAACCGGACATGGTGGCGAGGATGACAGAGGAAGAGGGAGGGGAAAGTACGGCAGAGGTAGAGGTAGTAGGAGAGTTCGAGAAGAA AAGTTAGAGACTGCGAAATCGGAATCTCTTCCGCCGCCTCCTTCTCCCTTTGTTGCCGCTGTAACGCCATTCCAGGCCGGCCAATTCCCAACTGATGTTG ATGTTCTTGGTAGTAAAAAATCGATGCCACTATCCGACAACTCGGATAACCCATCTGCCGGAAAAGTCGTTCCGGTTAATCGACCGGATAAAGGCGGCAC AATGGCTATCAGGAACACCAAGATCCGCGTGAATCACTTTCCTGTCAGGTTCAATCCTGAGAGCACCATCAGACACTACGACGTGAATGTGAAACCAGAT GATCATGAGCAGGTCCATAAAAAAGAATCCCCTCCTCCTGCCGTATCAAAGCTGTCGAAATCGATCCAAAGAATGATCCGCGACAAGCTATTCAGCGACG ACCCTTCTCATTTCCCTATCTCGATGACCGCCTATGATGGCGAGAAGAACATCTTCAGCGCGGTCCCACTTCCAACAGGACAGTTCAAGGTCGAACTGGC AGATCATGGAAGTACTAATTACATTTTCACCATCAAGCTTGTGAATGAACTCGAGCTCTGTAGGCTGAAAGATTACCTCTCAGGAAATCTCTTCTCCATA CCGAGGGAGGTGTTACAAGGCATGGATGTGGTGATGAAGGAGAATCCTGTCAGGAACATGATCTCCACCGGTCGAAGTTTCCATCCAATGGATGGTCACG ATGAACTCGGTTACGGGATAAGAGCTTCTAAAGGCTTCCAACATAGCCTGAAACCAACGTTCCAAGGTTTAGCTATGTGCTTGGACTACTCGGTCCTTGC ATTTCGAAAACGGATGCCAGTTCTCGACTTCCTGAAAGAGCATATCCCGGGGATTAGCCTGAATATTGATTTCTTCAGGTTCAGGAAAGATGTTGAGAGA GCATTGAGGGGACTCAAAGTGAATGTGACTCATAGGTTGACTAAACAGAAGTTCGTAGTCTCCGGATTGACTAAGGAGAATTCGCGTCGTCTCAAGTTCC CAACTGAAGATCCGAGTCGTTGTGAAGGGGGCAGTCATGAGATCAGACTGGTGGAGTACTTCAGGGATAAGTACAAGATGGATATTATGTACAAGGACAT TCCTTGCCTGGAGTTGGGGAAATCCGACAGGAAAAACTATGTTCCTATGGAGCTTTGTGTTTTAGTTGAAGGGCAGATATTTCCCAAGGAGCAGCTTGAT AAGAATGCAGCTGTGTTTCTTAAGAGGATGTCCCTTGCTAAGCCTGATGTTAGGAAGAGTACCATATGTAATATGGTCAAGGATGATCAAGGAAATGGAC CTTGTGGAGGAGAAGTGATCCGAAACTTCGGAATGGAGGTCGACACGAAAATGACTTCAGTTGTTGGGAGAGTGATAGCTGCTCCGGAGTTGAAACTATG CAACCGGAATGGTACTGCCATTCGAGTACCAGTCGACAAGGACAAATGCCAATGGAATCTCCTTGGCAAGAGAGTAGTAGATGGAAAATCGATCTCGAGG TGGGGTGTGATCAATTTCACCTCATCGGATCGACACAGGCTGAACCCGAGAACATTTGTTCCGAACCTGATTACTCGGTGCAGGAACCTAGGAATGTTGA TGGACGAACCCCTCTTTGTCGAACCATCTAACATGCACATGTTATCGAACACGGACGCGCTTCAGGAGCTCCTCGAGAGCCTTAATGATCGCGCTTACCA AATTTCTCATCAGGGGAAGCTGCAGATTCTGATTTGTGTGATGTCAGGGAAGCATCCTGGATACAAGAATCTCAAGTGGATCTCCGAGACTAGAGTTGGT TTGGTGACACAATGCTGTCTTTCTTATCATGCCAATGAAGGAAATGATCAGTATCTAGCTAACTTGGCCCTCAAGATTAATGCCAAACTAGGAGGAAGCA ATGCTGAGCTTTTCGACCGGTTTTCGTTCTTCGAAGGTGATAGGGGAGGAGGAGTTATGTTCATTGGTGCTGATGTTAACCATCCTGCCTCGAGGAACAC GACAAGTCCATCGATTTCGGCAGTTGTTGCGACCGTAAACTGGCCTGCTGCGAACCGGTACGCAGCTCGAGTTCGTCCTCAGAACAACCGTGTAGAGAAG ATGGTGAGCTTTGGTGAAATGTGTTTGGAGCTCGTCGAGAGCTATGCACGTCTCAACAGGGCGAAACCGGAGAAGATTGTTATATTTCGTGACGGGGTGA GTGAGGGACAGTTTGATATGGTTCTGAATGAAGAATTGCTCGACATGAAGAGAGCGTTCCGCTCGAACAATTATAACCCGACCGTTACGTTAATCGTCGC TCAGAAGCGTCACCAGACTCGTTTGTTCCTCGAGAACCAAAGGGACGGCGGGTTCACGGGTAATGTCTCCCCCGGTACGGTTGTGGACACGAAAATCGTG CACCCGTTCGAGTTCGATTTCTACCTGTGCAGCCACTACGGAAGCCTCGGGACTAGCAAGCCGACTCACTACCATGTCCTTTGGGACGAACACGGGTTCA CATCAGATCAGGTTCAAAAGCTCATTTACAATTTGTGCTTCACGTTCGCGCGATGCACCAAGCCGGTTTCGTTGGTTCCTCCTGTTTACTACGCCGATCT AGTTGCGTACCGGGGGAGGTTATACTACGAGGCAGTCATGGAAGGCCAGTCTCCTGCATCGGTCGGATCAACGATTTCCTCGACAGCATCGTCTTCATCG GCTTCGATAGAGGACAGGTTCTACAGGTTGCATGCTGACCTGGAGAACGACATGTTTTTCATATGA
AA sequence Show only first row Show all	>Lus10018290 pacid=23179278 polypeptide=Lus10018290 locus=Lus10018290.g ID=Lus10018290.BGIv1.0 annot-version=v1.0 MEGEGYQQKLRGGGGCQRGRGWQKGNFGGNGQYQPEFNWDDGHRSQGHLGPTRGRGRGGGGGAMPPINGGWETGHGGEDDRGRGRGKYGRGRGSRRVREE KLETAKSESLPPPPSPFVAAVTPFQAGQFPTDVDVLGSKKSMPLSDNSDNPSAGKVVPVNRPDKGGTMAIRNTKIRVNHFPVRFNPESTIRHYDVNVKPD DHEQVHKKESPPPAVSKLSKSIQRMIRDKLFSDDPSHFPISMTAYDGEKNIFSAVPLPTGQFKVELADHGSTNYIFTIKLVNELELCRLKDYLSGNLFSI PREVLQGMDVVMKENPVRNMISTGRSFHPMDGHDELGYGIRASKGFQHSLKPTFQGLAMCLDYSVLAFRKRMPVLDFLKEHIPGISLNIDFFRFRKDVER ALRGLKVNVTHRLTKQKFVVSGLTKENSRRLKFPTEDPSRCEGGSHEIRLVEYFRDKYKMDIMYKDIPCLELGKSDRKNYVPMELCVLVEGQIFPKEQLD KNAAVFLKRMSLAKPDVRKSTICNMVKDDQGNGPCGGEVIRNFGMEVDTKMTSVVGRVIAAPELKLCNRNGTAIRVPVDKDKCQWNLLGKRVVDGKSISR WGVINFTSSDRHRLNPRTFVPNLITRCRNLGMLMDEPLFVEPSNMHMLSNTDALQELLESLNDRAYQISHQGKLQILICVMSGKHPGYKNLKWISETRVG LVTQCCLSYHANEGNDQYLANLALKINAKLGGSNAELFDRFSFFEGDRGGGVMFIGADVNHPASRNTTSPSISAVVATVNWPAANRYAARVRPQNNRVEK MVSFGEMCLELVESYARLNRAKPEKIVIFRDGVSEGQFDMVLNEELLDMKRAFRSNNYNPTVTLIVAQKRHQTRLFLENQRDGGFTGNVSPGTVVDTKIV HPFEFDFYLCSHYGSLGTSKPTHYHVLWDEHGFTSDQVQKLIYNLCFTFARCTKPVSLVPPVYYADLVAYRGRLYYEAVMEGQSPASVGSTISSTASSSS ASIEDRFYRLHADLENDMFFI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Lus10018290 [exp]	0	1
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Lus10039173 [exp]	2.2	0.7501
					Lus10032535 [exp]	10.6	0.7240
					Lus10038720 [exp]	10.8	0.7240
AT5G19580			glyoxal oxidase-related protei...		Lus10043230 [exp]	11.0	0.7455
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Lus10034010 [exp]	15.0	0.6626
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014219 [exp]	15.6	0.6874
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023218 [exp]	18.3	0.7177
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	19.6	0.7138
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	21.2	0.7138
					Lus10009372 [exp]	22.6	0.7138

Compare expression of checked genes

Lus10018290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.