Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05320 563 / 0 O-fucosyltransferase family protein (.1) AT3G26370 45 / 0.0001 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040618 [exp] 835 / 0 AT3G05320 563 / 0.0 O-fucosyltransferase family protein (.1) Lus10036875 [exp] 47 / 2e-05 AT3G26370 935 / 0.0 O-fucosyltransferase family protein (.1) Lus10029239 [exp] 47 / 2e-05 AT1G29200 698 / 0.0 O-fucosyltransferase family protein (.1.2.3) Lus10008719 [exp] 43 / 0.0004 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10020943 [exp] 42 / 0.001 AT1G22460 594 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G117500 [exp] 673 / 0 AT3G05320 582 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G118800 [exp] 669 / 0 AT3G05320 587 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G008300 [exp] 43 / 0.0004 AT1G51630 599 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10018291 pacid=23179377 polypeptide=Lus10018291 locus=Lus10018291.g ID=Lus10018291.BGIv1.0 annot-version=v1.0 ATGGACTTACAATCCAGCTGCAAGAACCCAAGGTTCCTTGTGAGGAACTTGGATTCATTGCTCTACAAATGCCTAGCTCTAATTGGCCTAGCTCTCTTCA TCAGAGCTGTAGTTGTTCTTCCTTTCTCCAGCTACGGTGGTGTAATTCGCATGCAGAATCTTGATTCGGTCCACACGAATTTTGGAATCCGTCAAAACAA GTTCTTAGAAGTTCCCCAGATAGTGTGGGGGCTAAACAATCAGAAGATTGCGTTTGCAAGATCCTGCCTGACTGCTAGAATGCTCAATCGTACACTTCTA ATGCCTAGCCTCAGTGCTTCACTGTTCTACAAGGAAGTGGATCGCTTGCAGCCGATTTCGTTTGACAGAGTCTTCAAATTCGATAGATTTAACGAGATGT GTGAAGGGTTTGTGCAATTGGGGCAATATTCGGATCTGAAGAACGAGACTTTCGGAGTTTATGAGGTTCAGAAGGGGAGTGGAAGGAGATGGACTGTTGA GAGAGATTTGGATCAGTTGAATGGAATAACGAGTGATGATGAACACGAAGTGATTCGAATAGTCGGGAAGAATCCGTTTCTATGGCACGATCATTGGCCC GTTAAGGACTACGCTCGAGTTTTTGAATGTTTGGCTTTAGTTGATGAGATAAGTAGCGAAGCGGATAGAGTTGTGTGGAAAATTCGAGAGACTGGGAGGC TGATGATGAGAGCTAGTAGAGATGGCGGGGATGCTAATTCGGTTCCATACATTGCGGTTCACATGAGGATAGAGATAGACTGGATGATCCACTGCAAGAA GCTGGAGCAAAGATCGAACATTACCGAAATCTGCAGCAGCAAGAAGGAGATCATGGAAAGAGTTGGGAACATTGGTGGCTTGGAAAATCCAACAGTTGCC TATCTAGCTGTGGCCGATAGTCTGCTGGAGGATTCCTCGATACTTTCCGGTTGGAAACAAGGATTGGTTCCTATGGAAAAGAAGAAACTTGGTATTGATG GGATCTACAAGAAGTACCCTTATCTGATTCAGTCAGCGATAGACTACGAGGTGTGCTTGAGGGCCGATGTGTTCGTAGGGAACAGTTTCTCGACGTTTTC GAGCCTTGTAGCCCTTGATAGGACTCAGAAGACGATTAGGATGGGCGTTACGAGCTCGTGTAGTGGAGTGAACTTGAGATGGCCTACTTATGCATACAAC ATTCTAGGGGAATCAAATGGACCTCATAGGTGGATGACAAACATGTCTGATTCCAGCCTTAGAGCTATCAGCTATGGCACTAATGCCATCTCTTGTTAA
AA sequence Show only first row Show all	>Lus10018291 pacid=23179377 polypeptide=Lus10018291 locus=Lus10018291.g ID=Lus10018291.BGIv1.0 annot-version=v1.0 MDLQSSCKNPRFLVRNLDSLLYKCLALIGLALFIRAVVVLPFSSYGGVIRMQNLDSVHTNFGIRQNKFLEVPQIVWGLNNQKIAFARSCLTARMLNRTLL MPSLSASLFYKEVDRLQPISFDRVFKFDRFNEMCEGFVQLGQYSDLKNETFGVYEVQKGSGRRWTVERDLDQLNGITSDDEHEVIRIVGKNPFLWHDHWP VKDYARVFECLALVDEISSEADRVVWKIRETGRLMMRASRDGGDANSVPYIAVHMRIEIDWMIHCKKLEQRSNITEICSSKKEIMERVGNIGGLENPTVA YLAVADSLLEDSSILSGWKQGLVPMEKKKLGIDGIYKKYPYLIQSAIDYEVCLRADVFVGNSFSTFSSLVALDRTQKTIRMGVTSSCSGVNLRWPTYAYN ILGESNGPHRWMTNMSDSSLRAISYGTNAISC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05320			O-fucosyltransferase family pr...		Lus10018291 [exp]	0	1
AT3G10080			RmlC-like cupins superfamily p...		Lus10014192 [exp]	6.0	0.8858
AT2G43630			unknown protein		Lus10002105 [exp]	7.2	0.8937
AT2G43630			unknown protein		Lus10013892 [exp]	10.2	0.8716
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10004656 [exp]	10.9	0.8861
AT4G16380			Heavy metal transport/detoxifi...		Lus10039073 [exp]	13.9	0.8514
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10016874 [exp]	16.5	0.8118
AT5G66280		GMD1	"GDP-D-mannose 4,6-dehydratase...		Lus10028373 [exp]	17.2	0.8662
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10018208 [exp]	25.9	0.8794
AT2G44060			Late embryogenesis abundant pr...		Lus10008337 [exp]	27.7	0.7877
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10036886 [exp]	28.5	0.8723

Compare expression of checked genes

Lus10018291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.