Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51325 60 / 2e-12 RING/U-box superfamily protein (.1) AT4G11680 50 / 6e-08 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT5G08139 48 / 4e-07 RING/U-box superfamily protein (.1) AT5G45290 48 / 4e-07 RING/U-box superfamily protein (.1.2) AT2G01735 47 / 7e-07 RIE1 RING-finger protein for embryogenesis (.1) AT3G61180 46 / 2e-06 RING/U-box superfamily protein (.1) AT1G68070 46 / 2e-06 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT4G00305 44 / 2e-06 RING/U-box superfamily protein (.1) AT1G12760 45 / 5e-06 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT3G55530 45 / 5e-06 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040617 [exp] 214 / 9e-73 AT3G51325 69 / 3e-16 RING/U-box superfamily protein (.1) Lus10001568 [exp] 53 / 7e-09 AT3G55530 361 / 9e-127 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10004977 [exp] 51 / 4e-08 AT3G55530 371 / 1e-130 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10022743 [exp] 49 / 1e-07 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1) Lus10029582 [exp] 47 / 1e-06 AT3G61180 315 / 3e-106 RING/U-box superfamily protein (.1) Lus10034587 [exp] 47 / 1e-06 AT1G68070 489 / 6e-172 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10014823 [exp] 47 / 2e-06 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10005237 [exp] 46 / 2e-06 AT1G14200 72 / 1e-15 RING/U-box superfamily protein (.1) Lus10021801 [exp] 46 / 2e-06 AT1G68070 478 / 1e-169 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G109600 [exp] 79 / 1e-19 AT3G51325 62 / 3e-13 RING/U-box superfamily protein (.1) Potri.004G122000 [exp] 51 / 1e-08 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.014G075000 [exp] 51 / 3e-08 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.003G106600 [exp] 48 / 4e-07 AT5G45290 320 / 4e-102 RING/U-box superfamily protein (.1.2) Potri.001G127100 [exp] 48 / 5e-07 AT5G45290 286 / 2e-89 RING/U-box superfamily protein (.1.2) Potri.002G155200 [exp] 48 / 5e-07 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.008G134900 [exp] 47 / 1e-06 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.006G274700 [exp] 46 / 2e-06 AT5G24870 263 / 4e-81 RING/U-box superfamily protein (.1.2) Potri.009G034700 [exp] 46 / 2e-06 AT3G55530 333 / 1e-115 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.010G106300 [exp] 46 / 3e-06 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10018292 pacid=23179320 polypeptide=Lus10018292 locus=Lus10018292.g ID=Lus10018292.BGIv1.0 annot-version=v1.0 ATGATAATACTTAGCAAGCTGGCATCTCTTATCTGCAACTCCATCATTGGTCTCAAAAGCCAGCAAAGAATCTCGAAAAATGCGGCAAGTCCCAGTCCCA GGTCCGCAGTTGGGTATGTGCTGAAGAGGATCAAGGAAGGATTAATGACCAGCTCATCAAGAAATGTTCCATACGAAGAAGCGGAGGGTGATGATGATGG TAGTGAGTGTTGCTGCTGTATCTGTTTGATGCAGATGGAGATTGGTGGTGGATCTGATTTGAAGATGCTTCCTTGCCAGCATAAGTTCCACAAGGTTTGT ATAGAGAGGTGGCATATGAGGAAGAGGAGGAGGACTTGTCCACTCTGCCGATTTTCGATGGTGGATGAAGAAGAAGAAGTGCAAGAGTACCTGACAGAGG AGATGCTCATCTGGTTTTCTTCGTTTCATGTTGCTGGCTTTTAG
AA sequence Show only first row Show all	>Lus10018292 pacid=23179320 polypeptide=Lus10018292 locus=Lus10018292.g ID=Lus10018292.BGIv1.0 annot-version=v1.0 MIILSKLASLICNSIIGLKSQQRISKNAASPSPRSAVGYVLKRIKEGLMTSSSRNVPYEEAEGDDDGSECCCCICLMQMEIGGGSDLKMLPCQHKFHKVC IERWHMRKRRRTCPLCRFSMVDEEEEVQEYLTEEMLIWFSSFHVAGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51325			RING/U-box superfamily protein...		Lus10018292 [exp]	0	1
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10027782 [exp]	1.7	0.9884
AT3G51325			RING/U-box superfamily protein...		Lus10040617 [exp]	2.0	0.9839
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10035517 [exp]	3.2	0.9865
AT1G47530			MATE efflux family protein (.1...		Lus10042343 [exp]	3.7	0.9782
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10033485 [exp]	4.2	0.9849
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10020890 [exp]	5.0	0.9836
AT2G03200			Eukaryotic aspartyl protease f...		Lus10035961 [exp]	8.4	0.9754
					Lus10011724 [exp]	8.5	0.9791
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10003363 [exp]	9.4	0.9780
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10017175 [exp]	9.5	0.9733

Compare expression of checked genes

Lus10018292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.