Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19670 255 / 2e-79 RING/U-box superfamily protein (.1.2) AT5G60250 80 / 9e-16 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G25360 71 / 4e-13 RING/U-box superfamily protein (.1) AT3G43750 64 / 6e-11 RING/U-box protein with C6HC-type zinc finger domain (.1) AT3G45540 59 / 3e-09 RING/U-box protein with C6HC-type zinc finger (.1) AT3G45580 57 / 8e-09 RING/U-box protein with C6HC-type zinc finger (.1) AT3G45570 57 / 1e-08 RING/U-box protein with C6HC-type zinc finger domain (.1) AT3G45480 57 / 1e-08 RING/U-box protein with C6HC-type zinc finger (.1) AT2G26135 54 / 9e-08 RING/U-box protein with C6HC-type zinc finger (.1) AT3G45555 52 / 2e-07 RING/U-box protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040616 [exp] 707 / 0 AT4G19670 278 / 3e-88 RING/U-box superfamily protein (.1.2) Lus10038341 [exp] 329 / 6e-108 AT4G19670 607 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036202 [exp] 298 / 9e-96 AT4G19670 624 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036128 [exp] 88 / 2e-18 AT5G60250 410 / 1e-136 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10000412 [exp] 53 / 3e-07 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1) Lus10036127 [exp] 53 / 4e-07 AT5G60250 338 / 9e-108 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10026104 [exp] 49 / 3e-06 AT3G14250 240 / 1e-77 RING/U-box superfamily protein (.1) Lus10013371 [exp] 49 / 9e-06 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10004569 [exp] 43 / 0.0004 AT1G32340 535 / 0.0 NDR1/HIN1-like 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G117600 [exp] 305 / 1e-98 AT4G19670 661 / 0.0 RING/U-box superfamily protein (.1.2) Potri.012G119000 [exp] 286 / 1e-91 AT4G19670 622 / 0.0 RING/U-box superfamily protein (.1.2) Potri.006G104700 [exp] 77 / 4e-15 AT5G60250 424 / 4e-141 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G150100 [exp] 73 / 1e-13 AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G037200 [exp] 61 / 6e-10 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.003G187700 [exp] 56 / 3e-08 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.018G064400 [exp] 50 / 1e-06 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018293 pacid=23179381 polypeptide=Lus10018293 locus=Lus10018293.g ID=Lus10018293.BGIv1.0 annot-version=v1.0 ATGGAGGATCAAGCTGGTGATAATAAATTGGAAGATGAGCATGAAGAGTTTCGAAGCTGTTGTGGAGATGATGATAATGAAATTGGGGAGGGAACTGATG ATGAGGTTTCAGTGAAGATGTACTTTAAAGGGGTGTCAATAACTGAAGAAATTGGCTGTTCCGGAATTGGTGTTGTCATGGAAAGAAGAAAGGGAGAGGT TGCAATAGTTGATCAGGTGCAAAAGAAGCTTGATTTCTATGTTGATTCCTCGGTTGCTGACTACTTGGGCCTTATGGAAGGTCTTGTTGAGGCTGTGAAG AATGGCATTTCTCATGTTTATGCCTACACTGACTCCAGTTTGTTGTATAACCAGATAACACTAGAGGAGAAGCTTGAGATTCCACTCATTCTAGCATTGA GGGAAAGGATCATCGAGCTCGCCGGTGATCTGGAAACATTTCAACTGAAACTGGTTCCAAGCTGCTATCTAGAGAGATCATTGCGTCTTGCTCGGATAGC AGTTGGCATTGTCACTTTTCCTGCAAGTGGAGATAAATCACTTGAAAACTGTTCCATTTGTTGTGAAGACAAGATCTCGGCGATGATGATTACAATGAAT TGCTCTCACAAGTTTTGTTCACATTGTATGAGGACATATGTGGAAGAAAAAATGCAGTCTTGTCAAGTACCCATCAGATGCCCCCAACCGGGATGCAGAT ATTACATATCGGTCTCCGTAGGCCGATCATTCCTCACTTGTGATTCGTACGAACCTTTCGTGAAAGCTCAAGAAGAAGCCGATGATGCCCTTCTTTCCGG AAGAATTTGTTGCCCTCATGCAAATTGTTCTGCTTTACTTGACTCTACTCATGAATGTTTGTCTGCAAGGGAAAGTTCTTCAAATCTGTCGGATAACAAC TGGTGTAGTCAGGAGTTCTGTTATTCATGCGGATCAGAGTACAGAGATGGCGAGCAGATCTGCCAGTGTGCCTTGTGGGAGGGAGACAACAATACCGACG ATTCGATTGCACGATCTGTTCAAGTGTCTGAACAATGGGCATGGGAGACTTTTAATACAATGCCCATATTAACAGATGCATATTCAGTCCAAGAAAGATC ACAGCTTGCACTAATCCAGAGATTCCTCTCTGGAGGATTCAGCCTGAGTGATCACCACCACCACCCGCCCCAATCCCCTCCTCGTTCTACAGATTCTTCA TCAGTCAACATCATGAAAGACCTGCAACCATTCCCTTGGCTCGAGAGATTCATGTCTGTAATCAGTGATGACTACGATGAATACTCTTCGTTTGGTGATA GGTGA
AA sequence Show only first row Show all	>Lus10018293 pacid=23179381 polypeptide=Lus10018293 locus=Lus10018293.g ID=Lus10018293.BGIv1.0 annot-version=v1.0 MEDQAGDNKLEDEHEEFRSCCGDDDNEIGEGTDDEVSVKMYFKGVSITEEIGCSGIGVVMERRKGEVAIVDQVQKKLDFYVDSSVADYLGLMEGLVEAVK NGISHVYAYTDSSLLYNQITLEEKLEIPLILALRERIIELAGDLETFQLKLVPSCYLERSLRLARIAVGIVTFPASGDKSLENCSICCEDKISAMMITMN CSHKFCSHCMRTYVEEKMQSCQVPIRCPQPGCRYYISVSVGRSFLTCDSYEPFVKAQEEADDALLSGRICCPHANCSALLDSTHECLSARESSSNLSDNN WCSQEFCYSCGSEYRDGEQICQCALWEGDNNTDDSIARSVQVSEQWAWETFNTMPILTDAYSVQERSQLALIQRFLSGGFSLSDHHHHPPQSPPRSTDSS SVNIMKDLQPFPWLERFMSVISDDYDEYSSFGDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19670			RING/U-box superfamily protein...		Lus10018293 [exp]	0	1
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10033192 [exp]	1.4	0.9121
AT4G00950		MEE47	maternal effect embryo arrest ...		Lus10005972 [exp]	1.7	0.8820
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10010633 [exp]	2.4	0.9057
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10028937 [exp]	2.8	0.8646
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10003217 [exp]	5.9	0.8518
AT1G21630			Calcium-binding EF hand family...		Lus10035982 [exp]	6.3	0.8203
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10040261 [exp]	7.1	0.7950
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10011437 [exp]	7.5	0.8372
AT5G60160			Zn-dependent exopeptidases sup...		Lus10016765 [exp]	8.2	0.8077
AT5G60160			Zn-dependent exopeptidases sup...		Lus10022460 [exp]	9.5	0.7996

Compare expression of checked genes

Lus10018293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.