Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45100 244 / 3e-79 BRG1 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT4G19700 228 / 5e-73 BOI, RING Botrytis Susceptible1 Interactor, SBP (S-ribonuclease binding protein) family protein (.1) AT3G12920 189 / 1e-57 BRG3 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) AT1G79110 178 / 4e-53 BRG2 BOI-related gene 2, zinc ion binding (.1.2) AT1G60610 108 / 7e-27 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2), SBP (S-ribonuclease binding protein) family protein (.3) AT1G10650 105 / 9e-26 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT1G45976 99 / 2e-23 SBP1 S-ribonuclease binding protein 1 (.1) AT1G32740 94 / 1e-21 SBP (S-ribonuclease binding protein) family protein (.1) AT4G35070 89 / 4e-20 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT4G17680 86 / 7e-19 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040613 [exp] 560 / 0 AT5G45100 264 / 3e-87 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10031780 [exp] 214 / 4e-67 AT3G12920 260 / 3e-85 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Lus10031202 [exp] 187 / 2e-56 AT3G12920 255 / 3e-83 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Lus10030891 [exp] 113 / 3e-29 AT1G10650 275 / 1e-92 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030599 [exp] 109 / 3e-27 AT1G10650 380 / 4e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030597 [exp] 109 / 3e-27 AT1G10650 380 / 3e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10029136 [exp] 104 / 2e-25 AT1G10650 314 / 7e-107 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10013027 [exp] 103 / 4e-25 AT1G10650 382 / 3e-133 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10001131 [exp] 100 / 8e-24 AT1G45976 407 / 7e-143 S-ribonuclease binding protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G118000 [exp] 320 / 1e-108 AT5G45100 259 / 2e-85 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.012G119200 [exp] 313 / 1e-105 AT5G45100 244 / 1e-79 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.001G439600 [exp] 229 / 7e-73 AT3G12920 256 / 1e-83 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Potri.011G142700 [exp] 221 / 1e-69 AT3G12920 233 / 1e-74 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Potri.002G124700 [exp] 107 / 2e-26 AT1G45976 378 / 2e-131 S-ribonuclease binding protein 1 (.1) Potri.014G027000 [exp] 107 / 2e-26 AT1G45976 380 / 2e-132 S-ribonuclease binding protein 1 (.1) Potri.001G148600 [exp] 107 / 3e-26 AT1G32740 221 / 4e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.012G082200 [exp] 105 / 9e-26 AT1G10650 266 / 2e-87 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.010G042200 [exp] 102 / 1e-24 AT1G10650 393 / 2e-137 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.004G175500 [exp] 100 / 3e-24 AT4G35070 142 / 1e-41 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018294 pacid=23179291 polypeptide=Lus10018294 locus=Lus10018294.g ID=Lus10018294.BGIv1.0 annot-version=v1.0 ATGGCAGTTGAAGCTCCTCATATCTCCCTCTTCCCTTCTCACGCACTCCTCAACGATAACAGAGATCTCTTGAAACCGAATCAACCCAATACAATGTTCC CTGTTTCTCAAATGGGGTCCGGCGGATCCCTCCTCACCGCCGGTGGCTTCAACGACGGGCTTGTGCTGCCTCAACAGACTGCGGGTCTGCCTTTCTACCA ATCGCTTGTTAATTGCGATCTGGCTTCGATGAAGCCTTCTTTTACGACCAACAACAAGTCTGATAGCGGTGTCACTTACACGGTGAACCCACCTCTTCCG GCGACGAGGAAGCGTCCTAGGGATCCCGTCGCCGATCAGTTCCTTGCTGCCTATGGAGGAGCGGCGAAATTCTCCGGCGCCCGTGTAGGCGTATCTTCTC TCATCGACGGCGATCTCGTCTCCCAGATACAGCAACAGCAGTCTGAAATCGACCGATTCGTCGCCGAACATAACCAGAGAGTGAGGATTGAACTGGAGGA GAGGAGGAGGCGGCAATCGAGAATGCTGGTGTCGGCGATCCAAGAAGGGATTGCCAAGAAGATGAAGGAGAAAGACGAGGAGGTTCAACGGATGGTGAAA TTGAACTGGGTGCTGCAAGAGCGGGTGAAATCACTGTACGTGGAAAATCAAATTTGGAGGGATTTAGCGCAGACGAACGAGGCGGCGGTGAATACACTCC GGAGCAACCTCGAGCAGGTGCTGGCACATGTCGGCGACGATCGGAACAACAACGAGTGTGGTGCGGTGGTGGATGATGCAGAGTCGAGCTGTGGGAGCAG CGATGACCACCTTCACCGGCGGTCGGTGGCGGCGGAGGAGGAGAAGAGGAAAGATAACAACGGTCGGAAAATGATGTGCAGAAAGTGTGGGGAGAAGGAA TCGAGTGTGCTGGTTCTACCGTGCAGGCATCTGTGCCTGTGTACAGTTTGTGGGTCCACTCTTGTTGGGACTTGTCCAGTCTGCGATTCCGTCATGAATG GTAGTGTCCATGTTAATATTTGCTAG
AA sequence Show only first row Show all	>Lus10018294 pacid=23179291 polypeptide=Lus10018294 locus=Lus10018294.g ID=Lus10018294.BGIv1.0 annot-version=v1.0 MAVEAPHISLFPSHALLNDNRDLLKPNQPNTMFPVSQMGSGGSLLTAGGFNDGLVLPQQTAGLPFYQSLVNCDLASMKPSFTTNNKSDSGVTYTVNPPLP ATRKRPRDPVADQFLAAYGGAAKFSGARVGVSSLIDGDLVSQIQQQQSEIDRFVAEHNQRVRIELEERRRRQSRMLVSAIQEGIAKKMKEKDEEVQRMVK LNWVLQERVKSLYVENQIWRDLAQTNEAAVNTLRSNLEQVLAHVGDDRNNNECGAVVDDAESSCGSSDDHLHRRSVAAEEEKRKDNNGRKMMCRKCGEKE SSVLVLPCRHLCLCTVCGSTLVGTCPVCDSVMNGSVHVNIC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Lus10018294 [exp]	0	1
AT5G65495			unknown protein		Lus10012729 [exp]	1.4	0.9573
AT1G44770			unknown protein		Lus10014131 [exp]	5.4	0.9574
AT5G44250			Protein of unknown function DU...		Lus10042660 [exp]	6.2	0.9564
AT3G49390		CID10	CTC-interacting domain 10 (.1....		Lus10008851 [exp]	13.6	0.9368
AT3G20250		APUM5	pumilio 5 (.1)		Lus10034808 [exp]	14.0	0.9527
AT1G67623			F-box family protein (.1)		Lus10037978 [exp]	15.1	0.9035
AT1G13195			RING/U-box superfamily protein...		Lus10006253 [exp]	16.2	0.9521
AT3G26100			Regulator of chromosome conden...		Lus10006242 [exp]	17.4	0.9461
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	18.2	0.9528
AT1G10660			unknown protein		Lus10038056 [exp]	20.5	0.9051

Compare expression of checked genes

Lus10018294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.