Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31240 100 / 7e-25 Bromodomain transcription factor (.1) AT4G34340 100 / 1e-24 TAF8 TBP-associated factor 8 (.1) AT5G15570 90 / 9e-21 Bromodomain transcription factor (.1) AT3G02160 87 / 2e-19 Bromodomain transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040612 [exp] 281 / 5e-96 AT1G31240 122 / 1e-33 Bromodomain transcription factor (.1) Lus10026530 [exp] 98 / 2e-23 AT4G34340 270 / 2e-88 TBP-associated factor 8 (.1) Lus10013818 [exp] 95 / 2e-22 AT4G34340 272 / 3e-89 TBP-associated factor 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G118200 [exp] 144 / 7e-42 AT1G31240 137 / 4e-39 Bromodomain transcription factor (.1) Potri.012G119500 [exp] 130 / 8e-37 AT1G31240 141 / 2e-40 Bromodomain transcription factor (.1) Potri.006G125200 [exp] 104 / 4e-26 AT4G34340 198 / 2e-60 TBP-associated factor 8 (.1) Potri.004G116200 [exp] 101 / 7e-25 AT5G15570 237 / 8e-75 Bromodomain transcription factor (.1) Potri.016G092000 [exp] 96 / 5e-23 AT4G34340 246 / 6e-79 TBP-associated factor 8 (.1) Potri.017G094900 [exp] 96 / 7e-23 AT5G15570 233 / 3e-73 Bromodomain transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10406 [flax] [poplar] TAF8_C Transcription factor TFIID complex subunit 8 C-term CL0012 [flax] [poplar] Histone PF07524 [flax] [poplar] Bromo_TP Bromodomain associated
Representative CDS sequence Show only first row Show all	>Lus10018295 pacid=23179328 polypeptide=Lus10018295 locus=Lus10018295.g ID=Lus10018295.BGIv1.0 annot-version=v1.0 ATGAAAACCAGATCGGCTCTCCGCCGACGAAAGACCCCTGTTGCTGCAGCCACTCCCGCTGAAGTCCCCGCCACCAATCCATCAAGCTTCGCCGCCGATA TCGCCAGAATCGCAATCGCGCAGATATGCAAATCGGTCGGGTACAAGTCGGCGGAGGCTCCAGCTCTCGAATCCCTAAATCGAGTGGCCATACTGTACCT GGAAACCCTAGCTAGAAAGGCGGCGTCGTACTCGAACAATAGCAGCCGAACACAGTCGAATGTGTTCGACGTCGTCAACGCGCTGCAGGATCTCAACTCA GCGCGGGGATTCATCGGTGCGGCTGGGATCCACCACGGTTGCGTATTGAAGTCCTTCGTGGTGAAAGACGTGGAGCGTTTCGTGAACACGGTGGATGAAA TTCCCTTTGCAAAGCCCATTCTGAGGTCCAATAATAGGTGCCGGGAGCTTGGTACGGGTACGGCGGGTGGGGAGGTGAGAGGGAAGCATATTCCTGATTG GTTGCCGGATTTTCCTGATAAGAGCACGTATACGGAGGAGGTTAAAGGGAAGGAGAGGGAAAGGGAGCTGGAGTTGTGGGAGAAGTTGAGGACCCACGGT GACAATGGCGCCGGAGTAGGTGGGAAAGTTAAGGAGGAAAAGAGTGGAGGGGAGCTGGGGAAGGAGAGGGAGAAGGTGAAGTTTCAAATTGGGAGTGGGA AAACGCTCGCATCGAAGAAGAGAAGAAGAACAGAGATGTGA
AA sequence Show only first row Show all	>Lus10018295 pacid=23179328 polypeptide=Lus10018295 locus=Lus10018295.g ID=Lus10018295.BGIv1.0 annot-version=v1.0 MKTRSALRRRKTPVAAATPAEVPATNPSSFAADIARIAIAQICKSVGYKSAEAPALESLNRVAILYLETLARKAASYSNNSSRTQSNVFDVVNALQDLNS ARGFIGAAGIHHGCVLKSFVVKDVERFVNTVDEIPFAKPILRSNNRCRELGTGTAGGEVRGKHIPDWLPDFPDKSTYTEEVKGKERERELELWEKLRTHG DNGAGVGGKVKEEKSGGELGKEREKVKFQIGSGKTLASKKRRRTEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31240			Bromodomain transcription fact...		Lus10018295 [exp]	0	1
AT1G74900		OTP43	organelle transcript processin...		Lus10042307 [exp]	10.1	0.7294
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10002382 [exp]	14.7	0.7215
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Lus10031526 [exp]	22.4	0.7190
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10005310 [exp]	28.1	0.6958
AT2G25720			unknown protein		Lus10032479 [exp]	33.9	0.6830
AT5G24240			Phosphatidylinositol 3- and 4-...		Lus10018104 [exp]	41.9	0.7164
AT1G48040			Protein phosphatase 2C family ...		Lus10017106 [exp]	47.4	0.6924
AT5G49210			unknown protein		Lus10043148 [exp]	52.3	0.6315
AT5G62030			diphthamide synthesis DPH2 fam...		Lus10039108 [exp]	56.2	0.6695
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10011900 [exp]	64.9	0.6650

Compare expression of checked genes

Lus10018295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.