Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04750 325 / 2e-114 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT2G33120 325 / 3e-114 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT1G04760 325 / 3e-114 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT2G32670 324 / 6e-113 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT4G15780 270 / 1e-92 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT3G54300 266 / 1e-90 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT2G33110 256 / 7e-87 ATVAMP723 vesicle-associated membrane protein 723 (.1) AT5G11150 143 / 2e-42 ATVAMP713 vesicle-associated membrane protein 713 (.1) AT4G32150 139 / 4e-41 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1) AT5G22360 134 / 3e-39 ATVAMP714 vesicle-associated membrane protein 714 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040611 [exp] 387 / 1e-138 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10036203 [exp] 379 / 1e-135 AT1G04760 367 / 1e-130 vesicle-associated membrane protein 726 (.1) Lus10038342 [exp] 377 / 9e-135 AT1G04760 366 / 3e-130 vesicle-associated membrane protein 726 (.1) Lus10022804 [exp] 329 / 1e-115 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1) Lus10038166 [exp] 327 / 8e-115 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1) Lus10011870 [exp] 325 / 3e-114 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1) Lus10025933 [exp] 323 / 4e-113 AT1G04760 381 / 2e-136 vesicle-associated membrane protein 726 (.1) Lus10000754 [exp] 318 / 2e-111 AT1G04760 372 / 8e-133 vesicle-associated membrane protein 726 (.1) Lus10011737 [exp] 272 / 2e-93 AT1G04760 324 / 4e-114 vesicle-associated membrane protein 726 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G119600 [exp] 358 / 3e-127 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.015G118300 [exp] 355 / 4e-126 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.003G177700 [exp] 333 / 2e-117 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.001G050400 [exp] 319 / 6e-112 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.002G240900 [exp] 316 / 1e-110 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.008G209100 [exp] 269 / 7e-92 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1) Potri.008G019400 [exp] 262 / 5e-89 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.010G239900 [exp] 261 / 1e-88 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.009G018900 [exp] 141 / 1e-41 AT5G22360 367 / 6e-131 vesicle-associated membrane protein 714 (.1) Potri.018G025800 [exp] 137 / 2e-40 AT4G32150 366 / 2e-130 vesicle-associated membrane protein 711 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin
Representative CDS sequence Show only first row Show all	>Lus10018296 pacid=23179394 polypeptide=Lus10018296 locus=Lus10018296.g ID=Lus10018296.BGIv1.0 annot-version=v1.0 ATGGGGCAGAAACCGCTCATCTACGCCTTCGTCGCCCGCGGAACCGTCGTTCTAGCTGAGTACACCGAATTCAGCGGCAATTTCAACTCCATCGCCTTCC AGTGCCTCCAGAAACTCCCTGCCACCAACAACAAGTTCACTTACAACTGTGACGGCCACACTTTCAATTACCTCGTTGATAACGGCTACACGTACTGTGT GGTTGCTGATGAATCAGCTGGAAGGCAGGTTCCAATGGCTTTTCTGGAGCGTATCAAGGAAAATTTCATGACGAAATATGGTGGTGGAAAGGCTACAACA GCAACTGTTAACAGCCTGAACAAAGAATTTGGCCCAAAGTTGAAAGAGCATATGCAATACTGCGTGGACCATCCTGAAGAGATAAGCAAGCTCGCAAAGG TTAAAGCTCAGGTTTCAGAAGTCAAAGGAGTTATGATGGAGAACATCGAAAAGGTTTTGGACAGGGGAGAAAAGATAGAACTACTGGTGGACAAAACTGA GAACCTCCATCAGCAGGCACAAGATTTCAAATCGACCGGAACAAAGATCAGGAGAAAGATGTGGCTGCAGAATATGAAGATCAAGCTCATTGTCTTGGGG ATACTCGCTGCTCTGATCCTCATCATCGTACTCTCGGTTTGCAGAGGTTTCAACTGTGGGAAAAACTAA
AA sequence Show only first row Show all	>Lus10018296 pacid=23179394 polypeptide=Lus10018296 locus=Lus10018296.g ID=Lus10018296.BGIv1.0 annot-version=v1.0 MGQKPLIYAFVARGTVVLAEYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDGHTFNYLVDNGYTYCVVADESAGRQVPMAFLERIKENFMTKYGGGKATT ATVNSLNKEFGPKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFKSTGTKIRRKMWLQNMKIKLIVLG ILAALILIIVLSVCRGFNCGKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10018296 [exp]	0	1
AT5G53310			myosin heavy chain-related (.1...		Lus10027569 [exp]	1.0	0.8634
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10018455 [exp]	3.0	0.8240
AT3G51040		RTH	RTE1-homolog (.1.2.3)		Lus10041800 [exp]	4.0	0.8541
AT2G23780			RING/U-box superfamily protein...		Lus10022492 [exp]	4.2	0.8488
AT3G51040		RTH	RTE1-homolog (.1.2.3)		Lus10028350 [exp]	5.7	0.8295
AT1G35430			unknown protein		Lus10001289 [exp]	6.5	0.7956
AT3G15140			Polynucleotidyl transferase, r...		Lus10024133 [exp]	8.1	0.8351
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031262 [exp]	9.5	0.8316
AT5G18400			Cytokine-induced anti-apoptosi...		Lus10010213 [exp]	10.9	0.8032
AT4G25672		CPuORF12	conserved peptide upstream ope...		Lus10027512 [exp]	11.0	0.8480

Compare expression of checked genes

Lus10018296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.