Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10180 760 / 0 unknown protein AT1G10385 312 / 4e-95 Vps51/Vps67 family (components of vesicular transport) protein (.1) AT5G49830 309 / 6e-94 EXO84B exocyst complex component 84B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040609 [exp] 1301 / 0 AT1G10180 854 / 0.0 unknown protein Lus10034843 [exp] 317 / 1e-96 AT5G49830 1062 / 0.0 exocyst complex component 84B (.1.2.3) Lus10035756 [exp] 310 / 3e-94 AT5G49830 1049 / 0.0 exocyst complex component 84B (.1.2.3) Lus10037332 [exp] 308 / 3e-93 AT5G49830 1052 / 0.0 exocyst complex component 84B (.1.2.3) Lus10017692 [exp] 295 / 1e-88 AT1G10385 905 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033648 [exp] 278 / 6e-82 AT1G10385 891 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033387 [exp] 226 / 1e-63 AT5G49830 588 / 0.0 exocyst complex component 84B (.1.2.3) Lus10022896 [exp] 183 / 5e-48 AT1G10180 225 / 2e-62 unknown protein Lus10024929 [exp] 156 / 1e-39 AT1G10385 170 / 2e-44 Vps51/Vps67 family (components of vesicular transport) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G118500 [exp] 937 / 0 AT1G10180 788 / 0.0 unknown protein Potri.012G120000 [exp] 932 / 0 AT1G10180 809 / 0.0 unknown protein Potri.015G119300 [exp] 716 / 0 AT1G10180 628 / 0.0 unknown protein Potri.016G063700 [exp] 327 / 2e-100 AT1G10385 899 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Potri.010G249900 [exp] 304 / 9e-92 AT5G49830 1072 / 0.0 exocyst complex component 84B (.1.2.3) Potri.008G009100 [exp] 303 / 1e-91 AT5G49830 1070 / 0.0 exocyst complex component 84B (.1.2.3) Potri.014G195400 [exp] 187 / 3e-49 AT1G10180 215 / 8e-59 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018297 pacid=23179319 polypeptide=Lus10018297 locus=Lus10018297.g ID=Lus10018297.BGIv1.0 annot-version=v1.0 ATGGAGAGCAGCGAAGAAGAAGACGATTTCCCATCCATCGAAACCATCACTCCCCAATCCAAGATCGACTCCCTCTACCAATCCCACACTGAAAAGGGTA TCCGGAAGCTTTGTTGTGAGCTCTTGGATTTGAAGGATGCAGCGGAAAATATGTGTGGCAATATGCAAACCAAATACTTGGCTTTCTTGAGAATGTCTGA TGAAGTAGTGGAAATGGAGCACGAGTTGGTCGAACTGAGAAAGCATATTTCTGCTCAGGGGATTCTTGTACAGGATTTGATGACAGGTGTGGCCCGTGAA TTAGAAGAATGGAAGGCTATTGATGGTGACAATGCTTATTCTCAGCAAGATCAACCGATTGATGAACTCCAAGACATGTTATCACCCGAAGCAGACAATC ATCAGGCGCTTTTTCTGGAGAATGTTGATATTCTTTTGGCTGAACATAAAGTCGAAGAAGCTTTGGAGGCTATAATTTCTGAAGAGAGAAATTCACCAGA AGAATCAACATATAAGCAGGCTTTTCAGAAGAGAAAGTCAATGCTTGTCGAGCAGCTAACTGAGATTGTTCAACATCCATCAGCCAAAGTTGCAGAGATA AAGAAATCATTAGCTGCCTTAATCAAACTTGGGAAAGGTCCTCTGGCGCATCAAATGCTTCTAGATTTGTACCGGTCTCGTCTACGCAAGAACATTGAGG TTTTCCTTCCTTCATGTTCAGTGTGTCCCAAAACCTTTCCTGCCACACTTTGTAAGCTTGTGTTCTCATCTATCTCGTCTGCTACGAAAGAATCTATCCT GATTTTCGGTGACGACCCCATGTATGCTAATAGAGTTGTTCAGTCTGCTGAGTGGGAGATCGAATCTTTTGTGCGGTTGGTGAAGGATAATGCTCCTTCT CCAGACACTGTTTCAGCTTTGGGTGCTGCCAGTAACTATATTCAAGCTAGTCTTGCTTACTGTTCGATGTTGGAGCCTCAGGGTCTTAAATTGTCGAAGC TGCTTCTCGTTCTCTTGCGCCCATACATTGAGGAAGTCTTGGAGTTGAATTTTAGACGTGCAAGAAAGCTACTTCTTGATGCATCGGAACTTGATGAAAG CTCCTTACTATCAGCTCACCTTTCATCACCATTATCGGCTTTCGTATCATCCTCAGATATTATGCTTGTTGACAGTGGGATACGGTTTATGGACATAACG GAGGTAATACTTGGACAGTTGACCCCTCCAGTAGTCATGAATTTCGGAGGAAGTGTGTTAATGAGAATCTCACAACTATTTGACAAATACATGGACGTAC TCATCAAATCTCTGCCGGGACCATCTGATGATGACAACCTAACAGAGCTGAAGGAAGTGGTGCACTTCAGGACCGAGACAGACGAAGAACAACTTTCGCT CTTAGGAATGGCATTCACTATCCTTGATGAACTCTTACCTCATGCTGTGAAAACAGTGTGGAGTCTCAAGAAAGAAGGGAAGGAATCTACCAAAGACGAA TCTTCTCCACCTTCTGCTAGCATTCCGGGGGAGTTGAAGGACTGGAAGCGACAACTGCAGCATTCATTCGATAAGCTTAAGGATCATTTCTGCCGACAAT ATGTTCTCAGCTTTATCTATTCCACAGAAGGCAAAACTCGACTTAATGCCCAGATCTATTTAGACGGTGATGGAGATGATCTAGTTAATAACCCTGAACC TCTGCCTTCATTGCCGTTTCAGGCATTGTTTGCAAAGCTGCAGCAGTTTGCAACTGTGGCCGGAGATGTGCTACTGGGAAGAGAGAAAATACAGAAGCTA TTGTTGGCCAGATTGACCGAAACCGTTGTTATGTGGTTGTCGGATGAACAAGAGTTTTGGGGGGTATTCGAGGATAAGTCTGTCCCAATTAAACCATTAG GATTGCAACAGCTGCTTCTTGATATGCATTTCACTGTGGAACTTGCACGGTTTGCCGGTTATCCATCCCGGCAAGTCCACCAAATAGCCTCCGCCATAAT TGCTCGAGCCATCCGGACTTTCACAGCTCGAGGAATAGATCCACAAAGTGCACTACCGGAGGACGAATGGTTTGTTGAGACAGCAAAGTCGGCCATCAAC AAGCTCTTGGCTGGATCGGAGTCCGAGGAGGAAGTGTTGGACGATGGACACATAATTTCTCACGGGGATAGCGTCTCGGATTCAGACGATGACACTGCCT CTTCTCTTTCGTCTGTAGAATCTTCCGAGTCCTTTGTATCGGCAACCATGGATGCCATTGATAGCCCCGGAGAGTTAACTGATTAG
AA sequence Show only first row Show all	>Lus10018297 pacid=23179319 polypeptide=Lus10018297 locus=Lus10018297.g ID=Lus10018297.BGIv1.0 annot-version=v1.0 MESSEEEDDFPSIETITPQSKIDSLYQSHTEKGIRKLCCELLDLKDAAENMCGNMQTKYLAFLRMSDEVVEMEHELVELRKHISAQGILVQDLMTGVARE LEEWKAIDGDNAYSQQDQPIDELQDMLSPEADNHQALFLENVDILLAEHKVEEALEAIISEERNSPEESTYKQAFQKRKSMLVEQLTEIVQHPSAKVAEI KKSLAALIKLGKGPLAHQMLLDLYRSRLRKNIEVFLPSCSVCPKTFPATLCKLVFSSISSATKESILIFGDDPMYANRVVQSAEWEIESFVRLVKDNAPS PDTVSALGAASNYIQASLAYCSMLEPQGLKLSKLLLVLLRPYIEEVLELNFRRARKLLLDASELDESSLLSAHLSSPLSAFVSSSDIMLVDSGIRFMDIT EVILGQLTPPVVMNFGGSVLMRISQLFDKYMDVLIKSLPGPSDDDNLTELKEVVHFRTETDEEQLSLLGMAFTILDELLPHAVKTVWSLKKEGKESTKDE SSPPSASIPGELKDWKRQLQHSFDKLKDHFCRQYVLSFIYSTEGKTRLNAQIYLDGDGDDLVNNPEPLPSLPFQALFAKLQQFATVAGDVLLGREKIQKL LLARLTETVVMWLSDEQEFWGVFEDKSVPIKPLGLQQLLLDMHFTVELARFAGYPSRQVHQIASAIIARAIRTFTARGIDPQSALPEDEWFVETAKSAIN KLLAGSESEEEVLDDGHIISHGDSVSDSDDDTASSLSSVESSESFVSATMDAIDSPGELTD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10180			unknown protein		Lus10018297 [exp]	0	1
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Lus10005743 [exp]	1.0	0.9364
AT2G40316			unknown protein		Lus10007527 [exp]	6.5	0.8898
AT5G54910			DEA(D/H)-box RNA helicase fami...		Lus10007574 [exp]	7.6	0.9093
AT4G24790			AAA-type ATPase family protein...		Lus10033035 [exp]	14.4	0.8939
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	17.5	0.9078
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10020761 [exp]	17.9	0.8980
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10001197 [exp]	18.8	0.8970
AT1G16900			Alg9-like mannosyltransferase ...		Lus10028153 [exp]	19.2	0.8701
AT1G19880			Regulator of chromosome conden...		Lus10033168 [exp]	21.5	0.9055
AT5G53480			ARM repeat superfamily protein...		Lus10041453 [exp]	25.8	0.9035

Compare expression of checked genes

Lus10018297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.