Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39170 160 / 6e-49 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040608 [exp] 402 / 5e-144 AT2G39170 180 / 2e-56 unknown protein Lus10028816 [exp] 245 / 1e-81 AT2G39170 176 / 1e-54 unknown protein Lus10017465 [exp] 227 / 1e-74 AT2G39170 177 / 3e-55 unknown protein Lus10037961 [exp] 134 / 9e-40 AT2G39170 98 / 1e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G227400 [exp] 209 / 2e-67 AT2G39170 214 / 2e-69 unknown protein Potri.008G035000 [exp] 202 / 2e-64 AT2G39170 196 / 1e-61 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10167 [flax] [poplar] BORCS8 BLOC-1-related complex sub-unit 8
Representative CDS sequence Show only first row Show all	>Lus10018298 pacid=23179370 polypeptide=Lus10018298 locus=Lus10018298.g ID=Lus10018298.BGIv1.0 annot-version=v1.0 ATGGCTGAAATGATGAAGTATGTAGCAAATGAACCTTCTGTGGGGCTTTTTTACGTCCAGCAGCATGTGCAAAATGCAGCTCCGAATGTCATCACCATCA AGAACAGTGTGGCGGATAGGTCCCGTGATACAAGCTTGAGCACTCAAGACTTGGAGGATTCTATTACCACAGTGAGATCGATGAAAGAATGTGGTTTGCC CATTGCAAATGAGATGATCAAAGACATTAGAAAATCTATAGCAGTAATGTCTGAAAAAAGGCAGCCAAGAAGAGGATTAGGTCCTAGGTCATCTTCCGAG TTTCTGATGAGACGATCCAGCTCAATCGAACCGCCCATTCGTGGGGACAGCCACGATCCTGTTGCCAAAAAGTCAGGTTACTATTTCTCCAGCATGTTTA AGACTGCAAAGGAAAGAGCCAGCAGTTTAAAGTGGCCGCCAATTGATCTGAAGGATACGATACCAAGTCTTAGCCCATCGCAGTTTATCGAATCCAGCAG CACGAGTTCTTCTGCAGTTGTTGCTGAAGCTGACGAGCTGCTTTTGTCAAGCCAGACAGCTGAGGACACTGCTGAAGAGCTCCAAACAGAAACAAAAGAT GAGCAGTTGGGTGTGATTGAAACAAAAGACTATGATGTCTTTAAGGCTGATAAGCAAGCCAAATTAGAGGAGTGGCTGCTCGAAACGGCTGGTACTGGAG ACTAA
AA sequence Show only first row Show all	>Lus10018298 pacid=23179370 polypeptide=Lus10018298 locus=Lus10018298.g ID=Lus10018298.BGIv1.0 annot-version=v1.0 MAEMMKYVANEPSVGLFYVQQHVQNAAPNVITIKNSVADRSRDTSLSTQDLEDSITTVRSMKECGLPIANEMIKDIRKSIAVMSEKRQPRRGLGPRSSSE FLMRRSSSIEPPIRGDSHDPVAKKSGYYFSSMFKTAKERASSLKWPPIDLKDTIPSLSPSQFIESSSTSSSAVVAEADELLLSSQTAEDTAEELQTETKD EQLGVIETKDYDVFKADKQAKLEEWLLETAGTGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39170			unknown protein		Lus10018298 [exp]	0	1
AT2G39120		WTF9	what's this factor 9, Ubiquiti...		Lus10037979 [exp]	8.5	0.6843
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10023619 [exp]	12.8	0.6903
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10016543 [exp]	14.0	0.6997
AT2G41600			Mitochondrial glycoprotein fam...		Lus10042041 [exp]	15.2	0.6563
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Lus10031394 [exp]	15.9	0.6982
AT3G05640			Protein phosphatase 2C family ...		Lus10020671 [exp]	20.9	0.6762
AT1G62260		MEF9	mitochondrial editing factor 9...		Lus10022656 [exp]	32.6	0.6332
AT3G27050			unknown protein		Lus10010600 [exp]	33.4	0.5842
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10001853 [exp]	33.8	0.6284
AT4G18650			transcription factor-related (...		Lus10029229 [exp]	33.9	0.6677

Compare expression of checked genes

Lus10018298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.