Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39440 164 / 9e-50 unknown protein AT1G31200 116 / 3e-31 ATPP2-A9 phloem protein 2-A9 (.1) AT1G10155 113 / 5e-30 ATPP2-A10 phloem protein 2-A10 (.1) AT4G19840 50 / 8e-07 AtPP2A-1, ATPP2-A1 phloem protein 2-A1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040607 [exp] 702 / 0 AT2G39440 164 / 8e-50 unknown protein Lus10018301 [exp] 56 / 7e-09 AT1G65390 87 / 4e-20 phloem protein 2 A5 (.1.2) Lus10040603 [exp] 54 / 2e-08 AT1G33920 82 / 2e-19 phloem protein 2-A4 (.1) Lus10018303 [exp] 54 / 3e-08 AT1G65390 84 / 3e-20 phloem protein 2 A5 (.1.2) Lus10040606 [exp] 52 / 7e-08 AT1G65390 87 / 1e-21 phloem protein 2 A5 (.1.2) Lus10029674 [exp] 45 / 4e-05 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10018304 [exp] 45 / 5e-05 AT4G19840 197 / 3e-61 phloem protein 2-A1 (.1) Lus10040602 [exp] 41 / 0.001 AT4G19840 191 / 8e-59 phloem protein 2-A1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G120220 [exp] 182 / 9e-57 AT2G39440 183 / 5e-60 unknown protein Potri.012G120100 [exp] 179 / 2e-55 AT2G39440 183 / 5e-60 unknown protein Potri.015G120200 [exp] 160 / 6e-48 AT1G10155 137 / 4e-41 phloem protein 2-A10 (.1) Potri.012G120340 [exp] 154 / 6e-46 AT1G10155 133 / 1e-39 phloem protein 2-A10 (.1) Potri.012G120160 [exp] 134 / 3e-38 AT1G10155 120 / 1e-34 phloem protein 2-A10 (.1) Potri.012G120280 [exp] 131 / 3e-37 AT1G10155 125 / 1e-36 phloem protein 2-A10 (.1) Potri.015G120100 [exp] 120 / 5e-33 AT1G10155 122 / 2e-35 phloem protein 2-A10 (.1) Potri.015G118900 [exp] 119 / 1e-31 AT1G10155 103 / 5e-27 phloem protein 2-A10 (.1) Potri.015G118800 [exp] 105 / 6e-26 AT1G10155 86 / 4e-20 phloem protein 2-A10 (.1) Potri.015G120000 [exp] 101 / 8e-25 AT1G10155 82 / 6e-19 phloem protein 2-A10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0662 [flax] [poplar] Triple_barrel PF08615 [flax] [poplar] RNase_H2_suC Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
Representative CDS sequence Show only first row Show all	>Lus10018300 pacid=23179326 polypeptide=Lus10018300 locus=Lus10018300.g ID=Lus10018300.BGIv1.0 annot-version=v1.0 ATGGAAGAAGGGAGAAATATGGCCGGAGCAATAAACTTGACCGAACAGCAAGGGGCGAAATCTACCGTCGCGGACCTTACCGGCGCCGTTCACAATCTAC CGTGCTGCATAAAATACGACGGTCCTTCTGACGTTTCCGACTACTTCAAACCAAAACCCGCCGGGTTAGAAGTCGACGGACTGGTTGTGCAGCAAGCGTA TTTCAGGGGTAGAAACCTACAAGGGGCCACGATTCCTATCCCGCAAGGCTATTCTGGATTTGTATTGGGGAAGAAAAGTCTTGGCAACAAAAGGAAAGCT TCTGAATGCAACTCTAATTGTTGGGAGTCTACTGCTAAGTTTCAGAAGATAACCTACTGGAATCACGACACTCTACCTTCACAAGATGATACGTTTATTC GCTCACTCCATTGGTTGCCTGTTGCAGAAGCAGATCAGAATTCCTTAAAATATATAAAAATAGGCAAAGAGAAGGCTGGATCAGTAAAGCATCTGGCATT AACCAAGTTCTCTGCTTTCAACATGAACACAAAGCCACATCAAGAGGGAGATCCAAAGGAAGTGGTTTTCTCCGAGACTCCAAAATCATGGTGGTTTAAA CCCAAGGCATTCAGCATCGTATGGGGCAATGATGATCGCTACTGGCGTATTCCCAAGGATGGAGGACCGACAGAGCTGTTGCAGGTCAGTTGGCTCGAAG TAAGCAGCATCAACACATTAGATGGAGACATAGAACCGGGGAAGAAGTATGCAATTTCATTCCGGTTGCAGATGAAGCAAGGGGCTTTCGGTTGGAACGG GTGTTCTGTTTACTTGATGACCAAAGTAGGTCAGAGTGGGAAGTACACAGCTAAGAAGATAAAGCTGGCTGATCAGCCGGAGATGGATAAAGAGTTCGAT ACTGAGAAGCTTGAGATAATTGTCCCTGCAGATGCCACTGATAAGAGGCTTTACTTCGGGTTGTACGAAGTTTGGACTGGAAGATGGAAGGGTGGCCTGC TCATCCATGGTGCTACAGTGGAAGATATAACAGACCAGTGA
AA sequence Show only first row Show all	>Lus10018300 pacid=23179326 polypeptide=Lus10018300 locus=Lus10018300.g ID=Lus10018300.BGIv1.0 annot-version=v1.0 MEEGRNMAGAINLTEQQGAKSTVADLTGAVHNLPCCIKYDGPSDVSDYFKPKPAGLEVDGLVVQQAYFRGRNLQGATIPIPQGYSGFVLGKKSLGNKRKA SECNSNCWESTAKFQKITYWNHDTLPSQDDTFIRSLHWLPVAEADQNSLKYIKIGKEKAGSVKHLALTKFSAFNMNTKPHQEGDPKEVVFSETPKSWWFK PKAFSIVWGNDDRYWRIPKDGGPTELLQVSWLEVSSINTLDGDIEPGKKYAISFRLQMKQGAFGWNGCSVYLMTKVGQSGKYTAKKIKLADQPEMDKEFD TEKLEIIVPADATDKRLYFGLYEVWTGRWKGGLLIHGATVEDITDQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39440			unknown protein		Lus10018300 [exp]	0	1
AT2G39440			unknown protein		Lus10040607 [exp]	1.4	0.9660
AT2G41110		ACAM-2, ATCAL5,...	calmodulin 2 (.1.2)		Lus10021487 [exp]	2.2	0.9580
AT5G39020			Malectin/receptor-like protein...		Lus10025545 [exp]	2.4	0.9519
					Lus10034389 [exp]	2.6	0.9509
AT5G21910			unknown protein		Lus10038069 [exp]	2.8	0.9626
AT2G23970			Class I glutamine amidotransfe...		Lus10019964 [exp]	3.2	0.9646
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10002629 [exp]	3.5	0.9638
AT4G15690			Thioredoxin superfamily protei...		Lus10002887 [exp]	5.7	0.9386
					Lus10033890 [exp]	6.5	0.9415
AT5G37730			unknown protein		Lus10033584 [exp]	7.1	0.9383

Compare expression of checked genes

Lus10018300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.