Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65390 88 / 2e-20 ATPP2-A5 phloem protein 2 A5 (.1.2) AT1G33920 82 / 1e-19 ATPP2-A4 phloem protein 2-A4 (.1) AT1G09155 76 / 2e-16 ATPP2-B15 phloem protein 2-B15 (.1) AT4G19840 71 / 6e-15 AtPP2A-1, ATPP2-A1 phloem protein 2-A1 (.1) AT4G19850 66 / 3e-13 PP2A2, ATPP2-A2 ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-A2, lectin-related (.1.2) AT5G45070 64 / 4e-12 ATPP2-A8 phloem protein 2-A8 (.1) AT5G45080 64 / 5e-12 ATPP2-A6 phloem protein 2-A6 (.1) AT5G24560 61 / 3e-11 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02360 60 / 9e-11 ATPP2-B10 phloem protein 2-B10 (.1) AT2G26820 58 / 5e-10 ATPP2-A3 phloem protein 2-A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040606 [exp] 345 / 1e-122 AT1G65390 87 / 1e-21 phloem protein 2 A5 (.1.2) Lus10018303 [exp] 325 / 1e-114 AT1G65390 84 / 3e-20 phloem protein 2 A5 (.1.2) Lus10040603 [exp] 320 / 7e-113 AT1G33920 82 / 2e-19 phloem protein 2-A4 (.1) Lus10018304 [exp] 84 / 6e-19 AT4G19840 197 / 3e-61 phloem protein 2-A1 (.1) Lus10040602 [exp] 78 / 5e-17 AT4G19840 191 / 8e-59 phloem protein 2-A1 (.1) Lus10029674 [exp] 69 / 8e-14 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10042713 [exp] 67 / 6e-13 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10018171 [exp] 65 / 2e-12 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10020673 [exp] 63 / 8e-12 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G120300 [exp] 205 / 3e-67 AT5G24560 88 / 4e-21 phloem protein 2-B12 (.1) Potri.012G120400 [exp] 72 / 5e-15 AT4G19840 233 / 1e-76 phloem protein 2-A1 (.1) Potri.005G022000 [exp] 62 / 1e-11 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.015G120200 [exp] 61 / 1e-11 AT1G10155 137 / 4e-41 phloem protein 2-A10 (.1) Potri.006G266900 [exp] 62 / 2e-11 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016000 [exp] 60 / 1e-10 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.006G267000 [exp] 60 / 1e-10 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.001G050100 [exp] 58 / 4e-10 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.018G016100 [exp] 56 / 3e-09 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.018G015800 [exp] 54 / 9e-09 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018301 pacid=23179293 polypeptide=Lus10018301 locus=Lus10018301.g ID=Lus10018301.BGIv1.0 annot-version=v1.0 ATGGGTCAGATTCAAGAATACAACAGATCAAACGACATTTCCAGCCGATCCTCTTCCCCTCATTGGAAGCCTGCTGATGGAGGCTACTCCTTGATATCCC ATGATCCAAATCTTCAAGGAGGGTACAGAATCCCCACCAGAGCTCTCAACATCGTCTGGGGGAACGACCCTCGTTACTGGCAATGGGTCCCGCCCTCTGA TCGCGACAAGAGTGCAAGTGGGTTTAAAGACATGGGAGCAATGTTGGTTCAGGTGAACTGGATTCAGGTGACCGGGAGGCTTCCGATGAGTTGGTTGACG GGAAGTAGGAAGTATGAGGTAGTATGGGTGGTGAAGTTCAGGGTGGATGCGTTCGGGTGGCACTCTGTTCCGATCAAGTTCAAGGTGAAGCAGGGGAACG GAGAGGAGAAGGTGAAGAGCGTGGTTGTTGAGGCGTACAGGCAGAAGCACGGCGTGTGGCACGAGATCTCCGGCGGGGAGTTCACGGTGGCGGCCGGGAA AGGAGGAGGAAGGGTGGTGGAGTTTGGGATGTATGAAGTTGATAGCGAGTGGTGGAAAGGTAGCATGGTGATTGCAGGCGTCAAGATTGTCCCCAAATAT TGA
AA sequence Show only first row Show all	>Lus10018301 pacid=23179293 polypeptide=Lus10018301 locus=Lus10018301.g ID=Lus10018301.BGIv1.0 annot-version=v1.0 MGQIQEYNRSNDISSRSSSPHWKPADGGYSLISHDPNLQGGYRIPTRALNIVWGNDPRYWQWVPPSDRDKSASGFKDMGAMLVQVNWIQVTGRLPMSWLT GSRKYEVVWVVKFRVDAFGWHSVPIKFKVKQGNGEEKVKSVVVEAYRQKHGVWHEISGGEFTVAAGKGGGRVVEFGMYEVDSEWWKGSMVIAGVKIVPKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10018301 [exp]	0	1
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10040606 [exp]	2.2	0.8785
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000546 [exp]	2.4	0.8971
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10022670 [exp]	3.0	0.8533
AT5G19730			Pectin lyase-like superfamily ...		Lus10034981 [exp]	4.7	0.8869
AT3G45070			P-loop containing nucleoside t...		Lus10003068 [exp]	4.9	0.8804
AT3G62930			Thioredoxin superfamily protei...		Lus10005940 [exp]	7.1	0.8527
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10032169 [exp]	7.5	0.8818
					Lus10021453 [exp]	7.9	0.8682
AT2G40080		ELF4	EARLY FLOWERING 4, Protein of ...		Lus10028288 [exp]	8.1	0.8446
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10037505 [exp]	9.1	0.7951

Compare expression of checked genes

Lus10018301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.