Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33920 84 / 2e-20 ATPP2-A4 phloem protein 2-A4 (.1) AT1G65390 87 / 5e-20 ATPP2-A5 phloem protein 2 A5 (.1.2) AT4G19840 73 / 1e-15 AtPP2A-1, ATPP2-A1 phloem protein 2-A1 (.1) AT5G24560 72 / 3e-15 ATPP2-B12 phloem protein 2-B12 (.1) AT5G45080 72 / 1e-14 ATPP2-A6 phloem protein 2-A6 (.1) AT4G19850 67 / 6e-14 PP2A2, ATPP2-A2 ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-A2, lectin-related (.1.2) AT1G80110 66 / 6e-13 ATPP2-B11 phloem protein 2-B11 (.1) AT5G45070 65 / 2e-12 ATPP2-A8 phloem protein 2-A8 (.1) AT2G26820 64 / 5e-12 ATPP2-A3 phloem protein 2-A3 (.1) AT1G09155 59 / 1e-10 ATPP2-B15 phloem protein 2-B15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040603 [exp] 355 / 1e-126 AT1G33920 82 / 2e-19 phloem protein 2-A4 (.1) Lus10040606 [exp] 339 / 3e-120 AT1G65390 87 / 1e-21 phloem protein 2 A5 (.1.2) Lus10018301 [exp] 331 / 3e-117 AT1G65390 87 / 4e-20 phloem protein 2 A5 (.1.2) Lus10018304 [exp] 84 / 6e-19 AT4G19840 197 / 3e-61 phloem protein 2-A1 (.1) Lus10040602 [exp] 79 / 3e-17 AT4G19840 191 / 8e-59 phloem protein 2-A1 (.1) Lus10029674 [exp] 69 / 8e-14 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10042713 [exp] 67 / 3e-13 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10020674 [exp] 60 / 1e-10 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10023207 [exp] 59 / 3e-10 AT2G02240 213 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G120300 [exp] 208 / 2e-68 AT5G24560 88 / 4e-21 phloem protein 2-B12 (.1) Potri.012G120400 [exp] 83 / 5e-19 AT4G19840 233 / 1e-76 phloem protein 2-A1 (.1) Potri.015G120200 [exp] 65 / 5e-13 AT1G10155 137 / 4e-41 phloem protein 2-A10 (.1) Potri.005G022000 [exp] 64 / 5e-12 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.001G050100 [exp] 63 / 6e-12 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.006G266900 [exp] 61 / 4e-11 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G267000 [exp] 61 / 6e-11 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016000 [exp] 58 / 4e-10 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.012G120340 [exp] 56 / 8e-10 AT1G10155 133 / 1e-39 phloem protein 2-A10 (.1) Potri.018G015800 [exp] 56 / 2e-09 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018303 pacid=23179386 polypeptide=Lus10018303 locus=Lus10018303.g ID=Lus10018303.BGIv1.0 annot-version=v1.0 ATGAGTCTGATTCAACCACCCAGTAATCACAACAGCAACGACGTTACTAACCGTTCCTCTTCCCCTCATTGGAAGCCTGCTGATGGAGGCTACTCCTTGA TATCCCATGACCCAAATCTTCAAGGAGGGTACAGAATCCCCGCCAGAGCTCTCAACATAGTCTGGGGAAACGACCCGCGTTACTGGCAATGGATCCAGCT CCCCGATCTTGACAAGAGTGCATGTGGGTTTGAAGACATGGGAGCAATGTTGGTTCAGGTGAATTGGATTCAGGTGACCGGGAGGCTGCCACTGAGTTGG CTGATGGGAAGTCGAAAGTATGAGGTAGTATGGGTGGTGAAGTTCAGGGTAGATGCATTCGGGTGGCACTCTATTCCGATCAAGTTCAAGGTGAGGCAAG CGAACGGAGAAGAGAAGGTGAGGAGCGTGGCTCTGGAGCCGTACAGGCAGAAGCATGGTGTCTGGCACGAGATCTCCAGTGGGGAGTTCACAGTGGTCGC AGGGAGAGGAGGAGGGATGGTGGAGTTTGGGATGTACGAAGTTGATAGCGAGTGGTGGAAAGGCAGCTTAGTCATTGCAGGCGTCAAGATTATCCCGAAA TCTTGA
AA sequence Show only first row Show all	>Lus10018303 pacid=23179386 polypeptide=Lus10018303 locus=Lus10018303.g ID=Lus10018303.BGIv1.0 annot-version=v1.0 MSLIQPPSNHNSNDVTNRSSSPHWKPADGGYSLISHDPNLQGGYRIPARALNIVWGNDPRYWQWIQLPDLDKSACGFEDMGAMLVQVNWIQVTGRLPLSW LMGSRKYEVVWVVKFRVDAFGWHSIPIKFKVRQANGEEKVRSVALEPYRQKHGVWHEISSGEFTVVAGRGGGMVEFGMYEVDSEWWKGSLVIAGVKIIPK S

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10018303 [exp]	0	1
AT5G19890			Peroxidase superfamily protein...		Lus10026748 [exp]	13.1	0.8185
AT5G60590			DHBP synthase RibB-like alpha/...		Lus10041302 [exp]	21.8	0.7574
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10011831 [exp]	24.1	0.7354
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10040037 [exp]	34.4	0.8054
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10018124 [exp]	35.8	0.7386
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10037209 [exp]	48.3	0.8056
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10017721 [exp]	50.3	0.7155
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034036 [exp]	54.0	0.7913
AT3G14880			unknown protein		Lus10013746 [exp]	67.6	0.7254
AT3G62890			Pentatricopeptide repeat (PPR)...		Lus10033544 [exp]	77.7	0.7710

Compare expression of checked genes

Lus10018303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.