Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19840 197 / 4e-61 AtPP2A-1, ATPP2-A1 phloem protein 2-A1 (.1) AT1G33920 139 / 5e-40 ATPP2-A4 phloem protein 2-A4 (.1) AT4G19850 126 / 3e-34 PP2A2, ATPP2-A2 ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-A2, lectin-related (.1.2) AT1G65390 121 / 1e-30 ATPP2-A5 phloem protein 2 A5 (.1.2) AT5G45090 108 / 2e-26 ATPP2-A7 phloem protein 2-A7 (.1) AT5G24560 92 / 3e-21 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02240 91 / 3e-20 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G26820 91 / 7e-20 ATPP2-A3 phloem protein 2-A3 (.1) AT5G45080 90 / 1e-19 ATPP2-A6 phloem protein 2-A6 (.1) AT5G45070 84 / 1e-17 ATPP2-A8 phloem protein 2-A8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040602 [exp] 618 / 0 AT4G19840 191 / 8e-59 phloem protein 2-A1 (.1) Lus10042713 [exp] 97 / 2e-22 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10029674 [exp] 95 / 9e-22 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10040606 [exp] 86 / 2e-19 AT1G65390 87 / 1e-21 phloem protein 2 A5 (.1.2) Lus10018301 [exp] 84 / 9e-19 AT1G65390 87 / 4e-20 phloem protein 2 A5 (.1.2) Lus10018303 [exp] 84 / 1e-18 AT1G65390 84 / 3e-20 phloem protein 2 A5 (.1.2) Lus10040603 [exp] 83 / 3e-18 AT1G33920 82 / 2e-19 phloem protein 2-A4 (.1) Lus10020674 [exp] 79 / 2e-16 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10020673 [exp] 77 / 1e-15 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G120400 [exp] 277 / 9e-92 AT4G19840 233 / 1e-76 phloem protein 2-A1 (.1) Potri.005G022000 [exp] 92 / 7e-21 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.018G016100 [exp] 91 / 1e-20 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.006G267000 [exp] 88 / 2e-19 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G015800 [exp] 87 / 4e-19 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.013G012600 [exp] 84 / 4e-18 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.018G016000 [exp] 83 / 1e-17 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.015G120300 [exp] 79 / 5e-17 AT5G24560 88 / 4e-21 phloem protein 2-B12 (.1) Potri.001G050100 [exp] 75 / 4e-15 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.006G266900 [exp] 73 / 3e-14 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018304 pacid=23179281 polypeptide=Lus10018304 locus=Lus10018304.g ID=Lus10018304.BGIv1.0 annot-version=v1.0 ATGGGAACTAGTTGGTCTCAGGACGACGAGGCGGCTGCGAACCAGTCAATCCGCCAACCCATCCATGGTCAGGATCAGCTGCAGAGACAGTACTCGCCCC GAAAACAGAACGAAGCAACACAGAGTTCGGGGATCGGTCCAGCTGCCGCACCGAATCACCAACCAATCATCCGCAGTCAGGATCAGCTGCAGAGGCAGTA CTCAACCCAGAAACAGAGTGAATCAAGCCAGAGAGGGATGAAACCCAATGACACGAAGAGAGCCTCGGCCAAAGCTTCACAACTGCAACCAACTCACCAA CCAATCATCCATGGTCAGGGGCAGCTACAAAGGCAGTACTCAGCCCAGAAACAAAGTGAAACAAGGCAGAGTGGGACGAAACCGAACGACATGGAGAGAG CCTCATCTACAGCTTCGCAACTGCATCCAACTAATGAACCGATCATACATGGGCAGGGACAGCTGCAGAGGCAGTACTCAAGCCAAAAACAGAATGAGAC CAGAAACAGGGCATCTGCAGTAATGCACGTGAAGCTTCCACATAACTGGGAAGCTATACTGCGTGATGCAGATACACCGATCGACAGGTCTTCGGCAGAT AAGCTTTACAATCAGCTATCACACGGAAGGTACTGGGTTGACAGGAACTCCAACAGCAACTGTTTCACCTTGTTTGCTAGAGATCTCTTGATCACCTGGG CTGACGATCCGTACTACTGGCACTGGCCTTGTGTAGCTGACACCAGAGATGTGAAGGTGGAAGCAGCAGAGGTTTTAGCAGTTTGCTGGCTGGAAGTACA TGGGAACTTCGACACAGCAAAGCTTTCTCCGGGGATTTTGTATGAAGTAGTGTATGAGATTATGCTGAAAGATACAGCAGTGGGGTGGGAAGTTCCAGTG AATTTCAGACTCACTCTACCAAATGGAGTAAAGCAAGAGCAAAAAGAGGACCTGATGACCAAGCCAAGAATGCAGTGGATCGAAATCCCAGTTGGTGAGT TCAGAACTTCATCTGACAAAAACAATGGTGGGATGATGGAAATTTCTATGTATGAATATGAAGGCGGAACTTGGAAGAACGGGATTGTTGTCAAAGGTGT TACCATCCGACCCAAGAACTCAACTACACAAGCTATCAGGGTGATTTAA
AA sequence Show only first row Show all	>Lus10018304 pacid=23179281 polypeptide=Lus10018304 locus=Lus10018304.g ID=Lus10018304.BGIv1.0 annot-version=v1.0 MGTSWSQDDEAAANQSIRQPIHGQDQLQRQYSPRKQNEATQSSGIGPAAAPNHQPIIRSQDQLQRQYSTQKQSESSQRGMKPNDTKRASAKASQLQPTHQ PIIHGQGQLQRQYSAQKQSETRQSGTKPNDMERASSTASQLHPTNEPIIHGQGQLQRQYSSQKQNETRNRASAVMHVKLPHNWEAILRDADTPIDRSSAD KLYNQLSHGRYWVDRNSNSNCFTLFARDLLITWADDPYYWHWPCVADTRDVKVEAAEVLAVCWLEVHGNFDTAKLSPGILYEVVYEIMLKDTAVGWEVPV NFRLTLPNGVKQEQKEDLMTKPRMQWIEIPVGEFRTSSDKNNGGMMEISMYEYEGGTWKNGIVVKGVTIRPKNSTTQAIRVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Lus10018304 [exp]	0	1
AT1G76130		ATAMY2, AMY2	ARABIDOPSIS THALIANA ALPHA-AMY...		Lus10021836 [exp]	2.0	0.9270
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10014518 [exp]	2.0	0.9419
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10032169 [exp]	2.8	0.9385
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10032640 [exp]	3.5	0.9300
					Lus10041943 [exp]	3.5	0.9186
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10041390 [exp]	3.9	0.9262
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Lus10031271 [exp]	4.2	0.8964
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Lus10040602 [exp]	5.6	0.8451
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10033563 [exp]	5.8	0.8636
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036674 [exp]	6.9	0.9076

Compare expression of checked genes

Lus10018304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.