Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31190 547 / 0 IMPL1 myo-inositol monophosphatase like 1 (.1) AT3G02870 123 / 1e-32 VTC4 Inositol monophosphatase family protein (.1.2.3) AT4G39120 80 / 2e-16 HISN7, IMPL2 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) AT5G09290 53 / 1e-07 Inositol monophosphatase family protein (.1) AT5G63980 51 / 7e-07 SUPO1, RON1, ALX8, HOS2, FRY1, ATSAL1, SAL1 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) AT5G54390 47 / 2e-05 ATAHL, AHL HAL2-like (.1) AT5G63990 44 / 0.0001 Inositol monophosphatase family protein (.1.2) AT4G05090 43 / 0.0002 Inositol monophosphatase family protein (.1) AT5G64000 43 / 0.0002 ATSAL2, SAL2 Inositol monophosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040601 [exp] 608 / 0 AT1G31190 476 / 2e-169 myo-inositol monophosphatase like 1 (.1) Lus10027343 [exp] 131 / 4e-35 AT3G02870 419 / 5e-149 Inositol monophosphatase family protein (.1.2.3) Lus10039046 [exp] 108 / 2e-26 AT3G02870 323 / 1e-110 Inositol monophosphatase family protein (.1.2.3) Lus10041968 [exp] 71 / 2e-13 AT4G39120 447 / 6e-158 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Lus10017976 [exp] 62 / 2e-10 AT4G39120 429 / 9e-151 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G120492 [exp] 589 / 0 AT1G31190 551 / 0.0 myo-inositol monophosphatase like 1 (.1) Potri.015G120400 [exp] 578 / 0 AT1G31190 540 / 0.0 myo-inositol monophosphatase like 1 (.1) Potri.010G156300 [exp] 132 / 4e-36 AT3G02870 438 / 4e-157 Inositol monophosphatase family protein (.1.2.3) Potri.006G014900 [exp] 130 / 2e-35 AT3G02870 442 / 8e-159 Inositol monophosphatase family protein (.1.2.3) Potri.016G011000 [exp] 130 / 3e-35 AT3G02870 440 / 5e-158 Inositol monophosphatase family protein (.1.2.3) Potri.010G156500 [exp] 122 / 2e-32 AT3G02870 421 / 7e-151 Inositol monophosphatase family protein (.1.2.3) Potri.009G120600 [exp] 72 / 7e-14 AT4G39120 466 / 2e-165 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Potri.007G105100 [exp] 53 / 1e-07 AT5G63980 535 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.005G063900 [exp] 53 / 1e-07 AT5G63980 529 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.004G033200 [exp] 42 / 0.0004 AT4G05090 522 / 0.0 Inositol monophosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [flax] [poplar] Phospoesterase PF00459 [flax] [poplar] Inositol_P Inositol monophosphatase family
Representative CDS sequence Show only first row Show all	>Lus10018305 pacid=23179306 polypeptide=Lus10018305 locus=Lus10018305.g ID=Lus10018305.BGIv1.0 annot-version=v1.0 ATGGCCAGTTCTTTGCTCCTCTCCCCTGCAAACATCTCCATTCAATTTTCTCAGGTGCCCAAATCCTGTTCGCCATTCAATCGCTCCTTCCAATGCCTTG CTCCCTTCTCGTTGAAGGAAAATTCCCACGATGGCTACCCCAGACTTCCCTCCTTCCGCACGAAGCGAACGAGGAGCCACTGCACAAAGGCTGTTCTATC TGAGGTTCCTTACCAGAGCCAGTACCCGAAAATGGGAGCTTCTTATGCAGGATCCATACCGCTTAGCCAGCTCATTGAAGTCGTCGAGACTGCTGCCAAG ACTGGAGCTGAGGTGGTGATGGATGCAGTTAATAAGCCTCGGAACATCACTTACAAAGGACTTACTGACCTAGTCACCGACACAGACAAAATGAGCGAGG CTGCTATATTAGAAGTTGTTAACAAGAATTTTGGAGATCACCTTATTCTTGGGGAAGAAGGTGGTATCATTGGTGATAGTCTTTCGGATTACCTCTGGTG CATTGATCCTCTAGACGGAACAACAAATTTCACACATGGTTATCCCAGCTTTGCAGTTTCTGTTGGAGTTCTGTATCGAGGAAAACCAGCTGCAGCTGCT GTGGTGGAGTTTGTTGGAGGTCCTATGGCATGGAATACTCGTCTTTTCTCTGCAACTGCAGGTGGGGGAGCTTTTTGTAATGGTCAAAGAATTCATGCCA GTCAAACTGATACGGTGGAGCGATCACTTCTAGTAACTGGGTTCGGATATGAACATGACGATGCATGGTCTACTAACATTGAGTTATTCAAGGAGTTCAC AGATGTCAGCAGGGGTGTGAGAAGGCTCGGGGCTGCTGCTGTTGATATGTGTCACGTAGCTCTAGGGATCGTAGAAGCATACTGGGAATATCGTCTAAAA CCATGGGACATGGCTGCTGGTGTTCTGATGGTTGAAGAGGCTGGAGGAACAGTAACTCGCATGGATGGAGGGAAGTTCTGTGTCTTCGATAGATCAGTTT TGGTATCTAACGGGGTCCTCCATTCAAAGCTTTTGGAGAGAATCGCTCCTCCAACTGAAGAACTCAAAAACAAAGGAATAGATTTCTCACTATGGTTCAA GCCAGAAAATTACCACACAGATTTTTGA
AA sequence Show only first row Show all	>Lus10018305 pacid=23179306 polypeptide=Lus10018305 locus=Lus10018305.g ID=Lus10018305.BGIv1.0 annot-version=v1.0 MASSLLLSPANISIQFSQVPKSCSPFNRSFQCLAPFSLKENSHDGYPRLPSFRTKRTRSHCTKAVLSEVPYQSQYPKMGASYAGSIPLSQLIEVVETAAK TGAEVVMDAVNKPRNITYKGLTDLVTDTDKMSEAAILEVVNKNFGDHLILGEEGGIIGDSLSDYLWCIDPLDGTTNFTHGYPSFAVSVGVLYRGKPAAAA VVEFVGGPMAWNTRLFSATAGGGAFCNGQRIHASQTDTVERSLLVTGFGYEHDDAWSTNIELFKEFTDVSRGVRRLGAAAVDMCHVALGIVEAYWEYRLK PWDMAAGVLMVEEAGGTVTRMDGGKFCVFDRSVLVSNGVLHSKLLERIAPPTEELKNKGIDFSLWFKPENYHTDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31190		IMPL1	myo-inositol monophosphatase l...		Lus10018305 [exp]	0	1
AT5G12470			Protein of unknown function (D...		Lus10016379 [exp]	5.0	0.8504
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10031537 [exp]	9.0	0.8642
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10015143 [exp]	10.4	0.8582
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10040156 [exp]	19.1	0.8334
AT1G76450			Photosystem II reaction center...		Lus10030719 [exp]	19.7	0.8587
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Lus10018055 [exp]	21.8	0.8495
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Lus10031435 [exp]	25.1	0.8576
AT1G50450			Saccharopine dehydrogenase (....		Lus10014913 [exp]	30.0	0.8319
AT5G13720			Uncharacterised protein family...		Lus10016380 [exp]	32.8	0.8476
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Lus10015688 [exp]	34.2	0.8207

Compare expression of checked genes

Lus10018305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.