Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55180 629 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 617 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 597 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 362 / 2e-120 O-Glycosyl hydrolases family 17 protein (.1) AT3G07320 350 / 1e-116 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 345 / 6e-114 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G24318 343 / 7e-114 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G29360 341 / 4e-112 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G16230 336 / 2e-110 O-Glycosyl hydrolases family 17 protein (.1) AT4G14080 331 / 4e-109 MEE48 maternal effect embryo arrest 48, O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040600 [exp] 843 / 0 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004391 [exp] 702 / 0 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10032562 [exp] 699 / 0 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10015151 [exp] 578 / 0 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040461 [exp] 350 / 2e-116 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10038211 [exp] 349 / 1e-115 AT3G07320 614 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004962 [exp] 344 / 3e-114 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023576 [exp] 343 / 5e-114 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10034607 [exp] 333 / 5e-110 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G094400 [exp] 681 / 0 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G224600 [exp] 615 / 0 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G158400 [exp] 607 / 0 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G247900 [exp] 369 / 8e-124 AT3G07320 653 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.012G017800 [exp] 363 / 8e-122 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.018G068600 [exp] 357 / 1e-118 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G240000 [exp] 350 / 2e-116 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.009G115400 [exp] 347 / 1e-115 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 346 / 3e-115 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G056000 [exp] 344 / 2e-114 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10018306 pacid=23179371 polypeptide=Lus10018306 locus=Lus10018306.g ID=Lus10018306.BGIv1.0 annot-version=v1.0 ATGGCTACCTTCTCCACTTCACCCTTGTTCATTCTTCTAATTTCATCTTCCCTCCTTGCTTTCTTCTACTCTTCACCAACAGATGCCGCCGGAGGGTCCA TCGGAGTCAACTACGGGAGAATCGCCAACGACCTACCCACACCAGCCAAAGTGGTGGAACTCCTTAAGTCCCAAGGAATCACCCGAGTCAAACTCTACGA CACCAACTCCGACGTCCTCACAGCCCTCGCCGGCTCCGGCATCACCGTCACGGTGGCTCTCCCCAACGAGATGCTCTCCAACACCGCTGCCGACCAGACC TTTGCCGACAATTGGGTCCACGCCAACATCTCCCAATTCTACCCTTCAACCCAGTTCGAATCCATCGCCGTCGGTAACGAAGTCTTCGTCGACCCCAAAA ACACCACCCCGTATCTTGTACCAGCGATGAACAACATCTACAACTCGCTGGTGAAGTACAACCTCACCTCAATCAAGGTCTCGTCCCCGATCGCCCTCAG CGCGCTCCAAAATTCGTACCCGGCTTCATCCGGGTCGTTTAAACTCGAACTGGTTGATTCCGTGATTAAGCCGATGTTGAGCTTCTTAAAGCAAACGGAA TCTTATCTGATGGTCAATGCTTACCCTTTTTTTGCATACACGGCTAACGCCGATCAGATCTCGTTGGATTACGCTCTGTTTAAGGCCAATTCAGGGGTGG TGGACTCGGGTAATGGGCTCAAGTATTACAGCCTGCTCGAGGCCCAATTGGATGCCGTTAATGCAGCGATGGCGGCCGTACAATACGACGAGGTTAAGAT GGTGGTGACGGAAACTGGGTGGCCGTCGAAAGGTGATGAAAATGAGGTCGGAGCGGGTCAGGAGAACGCACAGGCGTACAACGATAACTTGGTCAACAGG GTTTTAACCGGGAAGGGGACGCCGTTGAGGCCGCAAGAGCCGTTAAACGTTTTTCTGTTTGCGCTATTTAATGAGAATCAGAAGCCGGGCCCCACTTCGG AGAGGAATTACGGGCTGTTCTACCCGGACGAGAAGAAGGTGTACGACATAACATTCTCGAGTACGACTGCGGTGGCGGGTAACGGAAGCAGCGGAGAAGG GGAGGGAGTTTCTAAGTCTTCGACACCGGGGGGTCAGACGTGGTGTGTGGCGAACTCGAAAGTCGGGGAAAAGAAGTTGCAGGCGGGGATCGATTACGCT TGCGGGGAAGGAAAGGCTGATTGCCGTCCGATTCAGGAAGGGGCCACGTGTTACGACCCCAATACACTGGAGGCGCACGCTTCTTATGCGTTCAATAGCT ATTACCAGATGAAGCAGCGTGGCTCCGGCACCTGCGATTTCGGCGGCGCCGCTTATGTTGTCACCCAACCGCCCAGTTATGGAAAATGCGACTTTCCCAC GGGATACTGA
AA sequence Show only first row Show all	>Lus10018306 pacid=23179371 polypeptide=Lus10018306 locus=Lus10018306.g ID=Lus10018306.BGIv1.0 annot-version=v1.0 MATFSTSPLFILLISSSLLAFFYSSPTDAAGGSIGVNYGRIANDLPTPAKVVELLKSQGITRVKLYDTNSDVLTALAGSGITVTVALPNEMLSNTAADQT FADNWVHANISQFYPSTQFESIAVGNEVFVDPKNTTPYLVPAMNNIYNSLVKYNLTSIKVSSPIALSALQNSYPASSGSFKLELVDSVIKPMLSFLKQTE SYLMVNAYPFFAYTANADQISLDYALFKANSGVVDSGNGLKYYSLLEAQLDAVNAAMAAVQYDEVKMVVTETGWPSKGDENEVGAGQENAQAYNDNLVNR VLTGKGTPLRPQEPLNVFLFALFNENQKPGPTSERNYGLFYPDEKKVYDITFSSTTAVAGNGSSGEGEGVSKSSTPGGQTWCVANSKVGEKKLQAGIDYA CGEGKADCRPIQEGATCYDPNTLEAHASYAFNSYYQMKQRGSGTCDFGGAAYVVTQPPSYGKCDFPTGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10018306 [exp]	0	1
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10040139 [exp]	1.0	0.9341
AT3G21530			DNAse I-like superfamily prote...		Lus10012772 [exp]	8.1	0.9290
AT5G50760			SAUR-like auxin-responsive pro...		Lus10003140 [exp]	8.7	0.9279
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10035621 [exp]	9.2	0.9236
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10040277 [exp]	12.7	0.9250
AT2G18570			UDP-Glycosyltransferase superf...		Lus10041713 [exp]	13.9	0.9062
AT3G25640			Protein of unknown function, D...		Lus10019166 [exp]	14.8	0.8782
AT1G29000			Heavy metal transport/detoxifi...		Lus10011893 [exp]	17.2	0.9197
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10014755 [exp]	17.3	0.9268
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10032554 [exp]	17.9	0.9209

Compare expression of checked genes

Lus10018306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.