Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01660 277 / 2e-82 unknown protein AT3G11000 186 / 4e-51 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2) AT3G27090 105 / 7e-25 DCD (Development and Cell Death) domain protein (.1) AT2G35140 107 / 8e-24 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) AT5G42050 100 / 2e-22 DCD (Development and Cell Death) domain protein (.1) AT5G61910 91 / 2e-18 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT2G32910 86 / 6e-17 DCD (Development and Cell Death) domain protein (.1) AT5G02990 64 / 2e-10 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G49000 59 / 5e-09 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G21950 56 / 5e-08 SKIP6 SKP1 interacting partner 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040599 [exp] 561 / 0 AT5G01660 179 / 8e-50 unknown protein Lus10012220 [exp] 190 / 7e-53 AT5G01660 224 / 1e-66 unknown protein Lus10023059 [exp] 113 / 7e-27 AT5G42050 355 / 8e-122 DCD (Development and Cell Death) domain protein (.1) Lus10032412 [exp] 112 / 1e-26 AT5G42050 359 / 1e-123 DCD (Development and Cell Death) domain protein (.1) Lus10012533 [exp] 109 / 7e-26 AT3G27090 432 / 5e-154 DCD (Development and Cell Death) domain protein (.1) Lus10041557 [exp] 108 / 8e-26 AT3G27090 428 / 2e-152 DCD (Development and Cell Death) domain protein (.1) Lus10017137 [exp] 109 / 4e-24 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10018316 [exp] 108 / 4e-24 AT2G35140 185 / 3e-48 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Lus10004128 [exp] 87 / 2e-17 AT2G32910 219 / 3e-60 DCD (Development and Cell Death) domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G074200 [exp] 367 / 1e-115 AT5G01660 488 / 2e-164 unknown protein Potri.016G127600 [exp] 341 / 2e-106 AT5G01660 628 / 0.0 unknown protein Potri.003G141900 [exp] 111 / 5e-26 AT5G42050 285 / 4e-94 DCD (Development and Cell Death) domain protein (.1) Potri.001G088800 [exp] 109 / 2e-25 AT5G42050 289 / 2e-95 DCD (Development and Cell Death) domain protein (.1) Potri.017G069100 [exp] 105 / 1e-24 AT3G27090 426 / 1e-151 DCD (Development and Cell Death) domain protein (.1) Potri.001G330300 [exp] 102 / 9e-24 AT3G27090 424 / 6e-151 DCD (Development and Cell Death) domain protein (.1) Potri.015G122300 [exp] 99 / 4e-21 AT2G35140 211 / 4e-56 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Potri.001G136300 [exp] 96 / 4e-21 AT5G61910 180 / 2e-50 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.019G066100 [exp] 90 / 1e-19 AT3G27090 251 / 2e-83 DCD (Development and Cell Death) domain protein (.1) Potri.013G029200 [exp] 76 / 7e-14 AT2G32910 187 / 3e-51 DCD (Development and Cell Death) domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10539 [flax] [poplar] Dev_Cell_Death Development and cell death domain CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10018307 pacid=23179264 polypeptide=Lus10018307 locus=Lus10018307.g ID=Lus10018307.BGIv1.0 annot-version=v1.0 ATGGCCGGCGGAAGGAAGGCAGGGAAAGCAGCGGCTCAGGTTTCCCGTAATTCGTCTAAGTTTCCGGCCAATACGTTCAATGTTTCTATTAGGAATTTGA GCAAGAGTGATCTCGCCGGAGTTATCTTCGGCTGCAAAAATTTCACGTTTGATGAATGTTTGTCCAAACAGTTGTTCGGATTGCCTCCTATCCATTTTCC GTATGTGCAGAAGATCGAGCCTGGTATGCCGCTCTTTTTGTTCAACTATTCCGATCGGAGGCTCCATGGGATATTTGAAGCTACAAGTCAAGGGAAGATG AATATCGATCCATATGCGTGGCTCGAGGAAGGCATTGACTCCACCCTGTATCCTGCTCAGGTGAAGATAAGAACTGTGTTAGCCTGTCACCCACTGTTAG AGAGCCGATACTCCCCAATACTCGCCCAGAATTACTATGATAAAGCTGCTCCAACCCACTTCTGGTTCGAACTGGACCAGGGTCAAACACGAAAGCTGAT CTCCCTGTTCTCATCTCTACCAGTCAAGACTAACGTTTCCCTCCCTAAGCAACTACCGTATTTCATGACTCTCAAGAAAATGCCCGTGGCTTCAGGACTT GGTAAAAGGAAAGAAGGTGACCAAGTTAAAACACAACCAGCCACCTTGTCTACAGAGTTTCTTGGTCTTACAGCGGATGGGGAGACATCTTATCTCCCAC CAAAACCTTGGGCGGCCTTGTTTAATCTGGGAAGTACTTCTGTTACGGGAAACGAAGCTGGTACAAGGCCAAAGGAATTCACGCCGGATAAACCTTGGGC TGCATTGTTCGGTGGAAAAACTAATTCAGACGTGGAAACGAATACAACGAATGACGTTAAAATGGAAATGCGATACTCATATTCCGAATTGGACTCTCAT CCTGTGCATCAGTCTGATGTGGGCTGGAACACCTTAGGCAATGCTGATGAGCCACTGGAATCCGGTTGGGGATCAGGTTGGGATTCGTTAGAGAAGGATA TTTCTACTGCATATAGCGGCGATTTACCTTGTGCTGACACAAGGCAGGAAATAGAAGACTCTAGATACGTAGATGATAACTCGAGCGCTGGAAGAAGCTC GTCTTCCGTTTCTGTGAATTTGGATGGAGATGTGAACCAATTACAAGTTCGGGCAGAGAAGAACGGTGTGAATGCACACGAGCCTGAACAAGAATGTGAC GACACGAATGTGATTTCTTCAGCTTATCAAAGTGTGGATGGAGAGAGTTTCTCAGAAGTGGCTTCGGATACAAGAACTGTAAGATCAAAGGATAAGGACA CAGGTTCTGCTGGGGGGATGATAGATTTGGAAATGCATTCTTCTGGTGCCTTCTCAATGTCCCAGCTCCTGACGAGAATGGAAGAATTGGAGCTTTATCA GGCAATGCAAGAAAAAAAAATTAGTTCATTGGAGCAGGAGCTGGTGAGATCAAAACTGCAGATACAGCAACTGAGCAAGGTGGTGGAATCTGCTGTATTC CCAGCTATCCATCTGACAGAAGAGTCAGATGATGAAGTTGATACAACGAGTTCAATATCTGACAAACTAGTATTAGTAGCAGGAGGGTTTAATGGTTCGT CCTGGCTGCCTGATTTGGATTCATACTCTTTGTCCGAAGACACGATGAAACAACTCAGTCCTATGCTGTCTGCACGTTCTTATGCTTCAGCAGCAAAGTT CAATAATGAACTCTACTTGATTGGTGGTTTACGCGGCGACGTGTTTTCTAACCAAGTTGAATCATACAATCCAGCAACAGATCAGTGGACATTACGCTCC TCATTAAACCGGGGGAAAGGCAGCCTAGCTGCTATTTCCTTGGATTCAAAGATTTTCGCTTTAGGAGGAGGGAACGAAGCTGGATGCTTTGCGGAGGTTG AAATGTTTAATGCAGATGCTGGAAGGTGGATTCTTACTCAGTCCATGCTTCATAAGCGTTTTTCCCACGCTGCAGCGGAAATTGACGGGATACTATATGT TGTTGGTGGTTTTGATGGAACTAGCTACTTGAAGTCAGTTGAAAGATTTGATCCCAGAGAACATTCCTGGAGAAGACTACAAGACATGAACACAATCCGA TCATGCCTCTGCGTAGCTGTTCTTAATGAGAAACTATATGCATTTGGAGGTTATAATAGAACTAGTATGGTGGCGAGCATGGAAGTTCTTGACCCTCGTA CCGGATCATGGATTAACAAAGAATCCATGAATACTGCTAGAAGCTACTTCGGCGCTTTTGTAATGGACGATACGATATATGCCCTCGGAGGTCTCCAGGA CAAAGGGGAATTACCGGACACGGTGGAGTATTACAAGGAAGGACAAGGGTGGAAGGTGAGCAACCTGAAAGGCATTGGAAAGAGATGCTTCCTCTCTACT GCTGTCTTCTGA
AA sequence Show only first row Show all	>Lus10018307 pacid=23179264 polypeptide=Lus10018307 locus=Lus10018307.g ID=Lus10018307.BGIv1.0 annot-version=v1.0 MAGGRKAGKAAAQVSRNSSKFPANTFNVSIRNLSKSDLAGVIFGCKNFTFDECLSKQLFGLPPIHFPYVQKIEPGMPLFLFNYSDRRLHGIFEATSQGKM NIDPYAWLEEGIDSTLYPAQVKIRTVLACHPLLESRYSPILAQNYYDKAAPTHFWFELDQGQTRKLISLFSSLPVKTNVSLPKQLPYFMTLKKMPVASGL GKRKEGDQVKTQPATLSTEFLGLTADGETSYLPPKPWAALFNLGSTSVTGNEAGTRPKEFTPDKPWAALFGGKTNSDVETNTTNDVKMEMRYSYSELDSH PVHQSDVGWNTLGNADEPLESGWGSGWDSLEKDISTAYSGDLPCADTRQEIEDSRYVDDNSSAGRSSSSVSVNLDGDVNQLQVRAEKNGVNAHEPEQECD DTNVISSAYQSVDGESFSEVASDTRTVRSKDKDTGSAGGMIDLEMHSSGAFSMSQLLTRMEELELYQAMQEKKISSLEQELVRSKLQIQQLSKVVESAVF PAIHLTEESDDEVDTTSSISDKLVLVAGGFNGSSWLPDLDSYSLSEDTMKQLSPMLSARSYASAAKFNNELYLIGGLRGDVFSNQVESYNPATDQWTLRS SLNRGKGSLAAISLDSKIFALGGGNEAGCFAEVEMFNADAGRWILTQSMLHKRFSHAAAEIDGILYVVGGFDGTSYLKSVERFDPREHSWRRLQDMNTIR SCLCVAVLNEKLYAFGGYNRTSMVASMEVLDPRTGSWINKESMNTARSYFGAFVMDDTIYALGGLQDKGELPDTVEYYKEGQGWKVSNLKGIGKRCFLST AVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01660			unknown protein		Lus10018307 [exp]	0	1
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10002046 [exp]	1.0	0.9988
					Lus10002045 [exp]	1.7	0.9945
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10035844 [exp]	2.4	0.9950
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018194 [exp]	2.6	0.9895
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10027398 [exp]	2.8	0.9940
					Lus10041871 [exp]	4.5	0.9919
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10027123 [exp]	4.9	0.9909
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10011333 [exp]	6.9	0.9880
AT5G59790			Domain of unknown function (DU...		Lus10005442 [exp]	7.2	0.9802
AT5G66440			unknown protein		Lus10025994 [exp]	7.7	0.9811

Compare expression of checked genes

Lus10018307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.