Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19860 749 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G03310 421 / 1e-143 ATLCAT3 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) AT1G27480 59 / 6e-09 alpha/beta-Hydrolases superfamily protein (.1) AT3G44830 49 / 6e-06 Lecithin:cholesterol acyltransferase family protein (.1) AT5G13640 49 / 8e-06 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) AT3G03370 42 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017142 [exp] 1105 / 0 AT4G19860 748 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10026853 [exp] 427 / 1e-145 AT3G03310 574 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) Lus10020225 [exp] 351 / 3e-113 AT3G03340 516 / 1e-179 unfertilized embryo sac 6, LUC7 related protein (.1) Lus10018308 [exp] 130 / 2e-31 AT1G69550 147 / 1e-35 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10018664 [exp] 62 / 5e-10 AT1G27480 491 / 5e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10007728 [exp] 61 / 9e-10 AT1G27480 484 / 3e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10019519 [exp] 53 / 7e-07 AT3G44830 923 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10017165 [exp] 49 / 1e-05 AT5G13640 991 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10037657 [exp] 48 / 2e-05 AT5G13640 1049 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G121000 [exp] 859 / 0 AT4G19860 781 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G121596 [exp] 839 / 0 AT4G19860 756 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G076300 [exp] 438 / 2e-150 AT3G03310 632 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) Potri.014G014400 [exp] 58 / 8e-09 AT1G27480 535 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G171000 [exp] 50 / 2e-06 AT5G13640 1055 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.003G063100 [exp] 50 / 5e-06 AT5G13640 1077 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02450 [flax] [poplar] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10018310 pacid=23179400 polypeptide=Lus10018310 locus=Lus10018310.g ID=Lus10018310.BGIv1.0 annot-version=v1.0 ATGTCGGTGTTGCTAGAGGACATAGTCAAGTCCGTGGAGCTCTGGCTGAAGTTCCTGAAGAAAGAACCCCAATCCTATGTTGATCCGAGTCTGGATCCTG TACTGTTGGTGCCGGGAGTAGCTGGCAGTATTCTTAATGCGGTGGATAAGAACGATAGCGGAAAGGTGGAGAGAGTTTGGGTTCGGATTTTTGCTGCTGA TCGTGAGCTGTGCGCCAAGCTCTGGTCTCGCTACGATCCTTCTACTGGCGCAACTGTGTCTTTAAATCAAAACATCGAAATTGTGGTTCCTGAAGAGAGA GCTGGATTGTATGCAATTGACGTTTTGGATCCTGACTTGATCATAGGACGTGAGTGTGTCTATTATTTTCATGACATGATCACTGAGATGCTGAAATGGG GCTTTCAAGAAGGGAAGACTTTGTTTGGTTTTGGGTATGATTTCCGACAAAGCAACAGGTTACCAGAGACAATGGATCGATTTGCTAAGAAGTTAGAGTC TACGTACAATGCCTCAGGAGGGAAGAAGATAAACGTTATAAGTCATTCCATGGGAGGTCTTTTAGTTAAATGTTTCATGGCCCTCCACAGTGATGTGTTT GAGAAGTATGTGAAGAATTGGATTGCAATTGCTGCTCCGTTCCAAGGTGCACCAGGGTATGTCATGTCAACTTTTCTAAATGGAATGTCGTTTGTCGAAG GCTGGCAGCAGAACTTTTTCATATCAAAATGGAGCATGCATCAGATGCTTATTGAATGTCCATCTGTATACGAATTGATGGCCCACCCAAACTTTGATTG GCAACACATTCCTCTTCTCGAGTTCTGGAGAAAAAAACAAGACAGTAATGGAACTTCCCAGATAATGCTTGAGAAATACCACACTAAAGAGACGGTTGAA GTTTATAAAAAGGCTCTTTCAAGTAACAAGATTAGTTATGACGGAGCTGATTTGCCATTGCCTTTCAACTCGGACATTATGGATTGGGCTGAAGAAACAT TCAAAATTCTGTCACGAGCGAAGGTTCCACCTAATGTCAAGTTCTACAATATATACGGGACCAGTCTGGCCACGCCTCATACCGTTTGCTATGGGGATGA AAAGACACCTGTCAGTGATCTAGAAGAACTGCGATTCTACCAGCCAAAATATGTATGCGTAGATGGAGATGGAACAGTTCCAGCAGAGTCGGCTAAGGCG GATGGTCTAACCGCAGAAGCGAGGGTTGCAATACCCGGTGAGCACAGAGGCATTCTTTGCGAGCACCATTTGTTCAGGGTTGTCAGGCACTGGATAAAGG CAGGTGCTCCGGATCCTTTCTACAACCCGGTCAACGACTATGTTATCCTTCCCACTGCATTCGAAATCGAAACCCACAAGGAGAAGGGTCTGCAGTTCAC TTCTCTAAAGGAGGAATGGGAGATCGTCTCAGGAGATCAAGAAGAGCATGACGGAATGGACGGCTTGAAGCCCGTGGTGAGTTCAATGACTGTTTCTCGA CCAGGCAACGATTGCAACTCTGCAGCAGAAGCTTGTGCAACCCTGGTCCTTCACCCGCAGAACAAAGGAAAGCAACATGTGGAGCTCAATGCATTAAGTG TCTCTGTTGATGCTTAG
AA sequence Show only first row Show all	>Lus10018310 pacid=23179400 polypeptide=Lus10018310 locus=Lus10018310.g ID=Lus10018310.BGIv1.0 annot-version=v1.0 MSVLLEDIVKSVELWLKFLKKEPQSYVDPSLDPVLLVPGVAGSILNAVDKNDSGKVERVWVRIFAADRELCAKLWSRYDPSTGATVSLNQNIEIVVPEER AGLYAIDVLDPDLIIGRECVYYFHDMITEMLKWGFQEGKTLFGFGYDFRQSNRLPETMDRFAKKLESTYNASGGKKINVISHSMGGLLVKCFMALHSDVF EKYVKNWIAIAAPFQGAPGYVMSTFLNGMSFVEGWQQNFFISKWSMHQMLIECPSVYELMAHPNFDWQHIPLLEFWRKKQDSNGTSQIMLEKYHTKETVE VYKKALSSNKISYDGADLPLPFNSDIMDWAEETFKILSRAKVPPNVKFYNIYGTSLATPHTVCYGDEKTPVSDLEELRFYQPKYVCVDGDGTVPAESAKA DGLTAEARVAIPGEHRGILCEHHLFRVVRHWIKAGAPDPFYNPVNDYVILPTAFEIETHKEKGLQFTSLKEEWEIVSGDQEEHDGMDGLKPVVSSMTVSR PGNDCNSAAEACATLVLHPQNKGKQHVELNALSVSVDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	0	1
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10017462 [exp]	1.0	0.9633
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	2.0	0.9514
AT1G70160			unknown protein		Lus10029209 [exp]	2.4	0.9498
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10015237 [exp]	2.6	0.9325
AT4G36195			Serine carboxypeptidase S28 fa...		Lus10028365 [exp]	2.8	0.9306
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10022957 [exp]	3.5	0.9461
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022189 [exp]	3.9	0.9217
AT1G18460			alpha/beta-Hydrolases superfam...		Lus10042972 [exp]	4.5	0.9298
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10027659 [exp]	4.7	0.9284
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10040213 [exp]	5.1	0.9247

Compare expression of checked genes

Lus10018310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.