Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19980 449 / 4e-159 GONST4 golgi nucleotide sugar transporter 4 (.1) AT1G76340 320 / 7e-108 GONST3 golgi nucleotide sugar transporter 3 (.1) AT4G31600 76 / 2e-15 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT1G07290 73 / 3e-14 GONST2 golgi nucleotide sugar transporter 2 (.1) AT2G13650 64 / 2e-11 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT4G32272 56 / 1e-08 Nucleotide/sugar transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017141 [exp] 614 / 0 AT5G19980 489 / 4e-175 golgi nucleotide sugar transporter 4 (.1) Lus10033058 [exp] 544 / 0 AT5G19980 492 / 2e-176 golgi nucleotide sugar transporter 4 (.1) Lus10017759 [exp] 544 / 0 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1) Lus10034672 [exp] 318 / 2e-107 AT1G76340 489 / 3e-174 golgi nucleotide sugar transporter 3 (.1) Lus10037000 [exp] 310 / 5e-104 AT1G76340 549 / 0.0 golgi nucleotide sugar transporter 3 (.1) Lus10034674 [exp] 306 / 4e-103 AT1G76340 473 / 2e-168 golgi nucleotide sugar transporter 3 (.1) Lus10015806 [exp] 251 / 1e-81 AT1G76340 434 / 2e-153 golgi nucleotide sugar transporter 3 (.1) Lus10005865 [exp] 73 / 4e-14 AT1G07290 521 / 0.0 golgi nucleotide sugar transporter 2 (.1) Lus10001205 [exp] 71 / 2e-13 AT1G07290 465 / 4e-164 golgi nucleotide sugar transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G071700 [exp] 501 / 7e-180 AT5G19980 484 / 6e-173 golgi nucleotide sugar transporter 4 (.1) Potri.010G057600 [exp] 309 / 8e-104 AT1G76340 557 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.008G177700 [exp] 303 / 3e-101 AT1G76340 540 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.007G106400 [exp] 73 / 5e-14 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.006G270700 [exp] 71 / 1e-13 AT4G31600 450 / 3e-160 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.018G009400 [exp] 68 / 2e-12 AT4G31600 447 / 3e-159 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.005G062900 [exp] 66 / 7e-12 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.009G044000 [exp] 63 / 8e-11 AT1G07290 472 / 5e-167 golgi nucleotide sugar transporter 2 (.1) Potri.018G127400 [exp] 54 / 6e-08 AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF08449 [flax] [poplar] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Lus10018311 pacid=23179315 polypeptide=Lus10018311 locus=Lus10018311.g ID=Lus10018311.BGIv1.0 annot-version=v1.0 ATGCATGCGATCCGAGCTGAACCTACGAAGCAACTGGCGACGACCAGCGTGGTGTTGGGCTACGCACTCTGTTCAAGCCTCCTCGCGGTAATCAACAAGT ACGCCATCACTAAATTCAACTACCCTGGTCTCCTCACAGCCCTCCAGTACTTAACATCCGCAGTTGGGGTATGGATTTTGGGCAAATTAGGGTTCTTGAC TCACGACGCGTTCAATTTAGAAACAGCCAAGAAATTCCTCCCCGCTGCATTCGTTTTCTACCTTGCAATCTTCACCAACACCAATCTCTTGCGCCACGCC AACGTGGACACCTTCATCGTGTTCAGATCCCTAACCCCACTACTCGTCGCCATAGCAGACACCATTTTCAGGAAACAACCCGTTCCAACTAAACTGACCT TTTTTGCCTTGTTTGTCATTTTGGGTGGTGCTTTAGGTTACGTAGCTACTGATTCTGCGTTCACACTCACTGCATATTCATGGGCGTTGGCTTATTTGGT TACCATCACGACTGAGATGGTGTACATTAAGCACATTGTGTCCAGCATTGGATTGAACACTTGGGGTTTGGTGCTTTACAACAATCTTCTCTCTTTGATC ATATCTCCTGTGTTTTGGGTTCTCACTGGGGAATATAGAGAGGTCTTTCATGCTGCTCTTGGTGACGATAGGAATTGGTTCAGAATTGATGCATTTGCTG GTGTGGCATTGTCTTGTGTGTTTGGTGTTCTCATTAGCTTCTTCGGATTTGCGGCCAGGAAGGCGATATCTGCTACTGCTTTCACTGTGACTGGCGTGGT TAACAAGTTTCTTACGGTTGGAATCAATGTGATGATCTGGGATAAGCATGCCAGTCCGTTTGGATTGCTTTGCCTTCTCTTCACGCTGTGTGGAGGTGTT CTTTATCAGCAGTCTGTTACTACTAATCCTGTTTCTAATCAGAAAGATAATGCTGAAGAAGATACTGAAAATGCTGTGCTTGTAGACCGAAAAGAGGGTG GCGATGAAGATGCAAGTGAGTAG
AA sequence Show only first row Show all	>Lus10018311 pacid=23179315 polypeptide=Lus10018311 locus=Lus10018311.g ID=Lus10018311.BGIv1.0 annot-version=v1.0 MHAIRAEPTKQLATTSVVLGYALCSSLLAVINKYAITKFNYPGLLTALQYLTSAVGVWILGKLGFLTHDAFNLETAKKFLPAAFVFYLAIFTNTNLLRHA NVDTFIVFRSLTPLLVAIADTIFRKQPVPTKLTFFALFVILGGALGYVATDSAFTLTAYSWALAYLVTITTEMVYIKHIVSSIGLNTWGLVLYNNLLSLI ISPVFWVLTGEYREVFHAALGDDRNWFRIDAFAGVALSCVFGVLISFFGFAARKAISATAFTVTGVVNKFLTVGINVMIWDKHASPFGLLCLLFTLCGGV LYQQSVTTNPVSNQKDNAEEDTENAVLVDRKEGGDEDASE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10018311 [exp]	0	1
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10038221 [exp]	1.0	0.8679
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10025680 [exp]	2.4	0.8609
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Lus10029170 [exp]	2.8	0.8554
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017141 [exp]	2.8	0.8623
					Lus10006569 [exp]	3.5	0.8086
AT4G08850			Leucine-rich repeat receptor-l...		Lus10020936 [exp]	5.1	0.7886
AT5G51040			unknown protein		Lus10043024 [exp]	5.5	0.8414
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10005201 [exp]	7.5	0.8008
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10041918 [exp]	8.1	0.7920
AT4G21700			Protein of unknown function (D...		Lus10030937 [exp]	8.5	0.7952

Compare expression of checked genes

Lus10018311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.