Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45030 746 / 0 Trypsin family protein (.1.2) AT2G35155 726 / 0 Trypsin family protein (.1) AT3G12950 629 / 0 Trypsin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017140 [exp] 1103 / 0 AT5G45030 776 / 0.0 Trypsin family protein (.1.2) Lus10036208 [exp] 928 / 0 AT5G45030 830 / 0.0 Trypsin family protein (.1.2) Lus10038347 [exp] 922 / 0 AT5G45030 834 / 0.0 Trypsin family protein (.1.2) Lus10031205 [exp] 696 / 0 AT5G45030 734 / 0.0 Trypsin family protein (.1.2) Lus10031785 [exp] 690 / 0 AT5G45030 738 / 0.0 Trypsin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G121700 [exp] 873 / 0 AT5G45030 804 / 0.0 Trypsin family protein (.1.2) Potri.015G121400 [exp] 860 / 0 AT5G45030 821 / 0.0 Trypsin family protein (.1.2) Potri.011G143200 [exp] 744 / 0 AT5G45030 752 / 0.0 Trypsin family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018312 pacid=23179360 polypeptide=Lus10018312 locus=Lus10018312.g ID=Lus10018312.BGIv1.0 annot-version=v1.0 ATGGACAGGAACAGGTTGGACTTAAGGACGCACCACTCCGGATCAACAACACAGTCGGAAGATTCTGCATTGGATATGGAAAGAAACTGCTGCAACTATT CTAATCTTCCTTGGTCAAGTCCAGCTTCATTGCAGCCCGGTGGTCAGCAGCACTCTGAGAGTAATGCTGCTTATTTTTCATGGCCTGCTGTGAATAGATT GAGTGACTCGGCCGAAGATAGAGCCAACTATTTTGGTAACCTGCAGAAAGGGGTGTTGCCAGAAATTCTTGGCCGGCTGCCATCAGGGCAGCAATCTACT ACTTTGCTTGAACTGATGACCATCAGGGCTTTCCATAGCAAAATCTTGCGCAGGGTAAGCCTAGGAACTGCGATTGGATTTAGGATCCGGCGGGGTGTTT TAACTAACATTCCTGCTATTCTTGTCTTTGTCGCCCGGAAAGTACACCGGCAGTGGCTCAATCATGTCCAGTGCCTACCTTCTGCCCTTGAGGGACCAGG AGGTGTTTGGTGTGATGTGGATGTTGTCGAATTCTCGTATTTTGGTGCTCCTGCTCCTACACCGACGGAACAACTGTACACTGAACTTGTTGATGGGTTA AGGGGAGGTGATCCATCTGTTGGTTCTGGTTCCCAGGTGGCTAATCAAGAAACCTATGGAACCCTGGGTGCTATAGTGAAAAGCCGGACAGAAAACAGAC AGGTTGGTTTCCTCACAAATCGTCACGTTGCAGTTGATTTAGAACAACCAAACCAGAAGATGTTTCATCCTTTACCTCCCAGCCTTGGACCTGGAGTTTA TTTGGGTGCGGTAGAGAGAGCAACCTCTTTCATCTCAGACGAGCTTTGGTATGGAACTTTTGCTGGAATGAACCCAGAAACATTTGTTCGGGCAGACGGA GCCTTCATTCCATTTGCAGAAGATTTCAACATGAACAACGTCACCACATTGGTTAGAGGTGTGGGGGAGATTGGTGACGTCCATGCTATTGACTTGCAGT CTCCAATCAACGGTCTTATCGGTAGGCAAGTAGTGAAAGTTGGAAGAAGCTCCGGATTAACGACTGGCACAATAATGGCGCATGCTCTGGAGTATAACGA CGACAAAGGGATCTGTTTCTTTACGGATTTTCTGGTCGTCGGCGAGAATCAGCAGCCGTTTGATCTTGAAGGGGATAGTGGTAGCCTCATTCTCTTGACT GGTAGTGGGAGTGGAGAGAAGTTGCAACCGGTTGGAATCATTTGGGGAGGGACTGCAAATAGAGGCAGGCTGAAGCTGAAAGTTGGCCAACCACCAGAGA ATTGGACCAGTGGGGTTGATCTTGGGCGCCTACTTGACCTCCTTGAACTCGATCTCATCACGACGGCTGAAGGACTTCAAGGTGCAGTGCAAGATCAAAG AACCGCATCAGCAGCAGCAATGTATTCTCCAGTTGATGAGTCATCACCGCGAGTTCTCGTCCCATCAAAGGATAAGATGAAGGAGTGCTTTGAACCCTTT AATTTGAACGTCACACAAGTTGAGCATGTGACACCAACCGTACCTTCAATCGGGCCAGAGTTCCACATAAATGACCACGATGGCACAGATGCTGCACCGA GCATCGAGCACCAGTTCATTCCAAGCATCACGGTAAATGAAAAGCAGCATGTGGCAGAGGGCCCGGATTCGAAGGACCTTTCGGGTTTAAAGAAAGTGTG TGATGGAGACATGTGTGTGTCATTGCAGTTGTGTGAGCCTGAGGGAAAGAGAAGAAGAATGCAGTCTGGATCATCTCCCAACAATAAAGATTCCAAATGA
AA sequence Show only first row Show all	>Lus10018312 pacid=23179360 polypeptide=Lus10018312 locus=Lus10018312.g ID=Lus10018312.BGIv1.0 annot-version=v1.0 MDRNRLDLRTHHSGSTTQSEDSALDMERNCCNYSNLPWSSPASLQPGGQQHSESNAAYFSWPAVNRLSDSAEDRANYFGNLQKGVLPEILGRLPSGQQST TLLELMTIRAFHSKILRRVSLGTAIGFRIRRGVLTNIPAILVFVARKVHRQWLNHVQCLPSALEGPGGVWCDVDVVEFSYFGAPAPTPTEQLYTELVDGL RGGDPSVGSGSQVANQETYGTLGAIVKSRTENRQVGFLTNRHVAVDLEQPNQKMFHPLPPSLGPGVYLGAVERATSFISDELWYGTFAGMNPETFVRADG AFIPFAEDFNMNNVTTLVRGVGEIGDVHAIDLQSPINGLIGRQVVKVGRSSGLTTGTIMAHALEYNDDKGICFFTDFLVVGENQQPFDLEGDSGSLILLT GSGSGEKLQPVGIIWGGTANRGRLKLKVGQPPENWTSGVDLGRLLDLLELDLITTAEGLQGAVQDQRTASAAAMYSPVDESSPRVLVPSKDKMKECFEPF NLNVTQVEHVTPTVPSIGPEFHINDHDGTDAAPSIEHQFIPSITVNEKQHVAEGPDSKDLSGLKKVCDGDMCVSLQLCEPEGKRRRMQSGSSPNNKDSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45030			Trypsin family protein (.1.2)		Lus10018312 [exp]	0	1
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10024649 [exp]	6.9	0.7321
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10043289 [exp]	16.5	0.7021
AT5G07980			dentin sialophosphoprotein-rel...		Lus10034692 [exp]	17.9	0.7078
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10019433 [exp]	25.7	0.6760
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030660 [exp]	36.3	0.6487
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Lus10021246 [exp]	36.7	0.6628
AT4G13540			unknown protein		Lus10004393 [exp]	50.9	0.6706
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Lus10025335 [exp]	51.2	0.6550
AT5G25360			unknown protein		Lus10002164 [exp]	52.3	0.6450
AT3G61880		CYP78A9	cytochrome p450 78a9 (.1.2)		Lus10017334 [exp]	56.4	0.6416

Compare expression of checked genes

Lus10018312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.