Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19900 654 / 0 alpha 1,4-glycosyltransferase family protein (.1) AT2G38152 140 / 3e-36 alpha 1,4-glycosyltransferase family protein (.1) AT3G09020 139 / 1e-35 alpha 1,4-glycosyltransferase family protein (.1) AT5G01250 124 / 2e-30 alpha 1,4-glycosyltransferase family protein (.1) AT2G38150 119 / 7e-29 alpha 1,4-glycosyltransferase family protein (.1) AT1G61050 119 / 2e-28 alpha 1,4-glycosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017137 [exp] 1025 / 0 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10027772 [exp] 137 / 7e-35 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10035525 [exp] 136 / 2e-34 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10004828 [exp] 130 / 3e-32 AT2G38150 430 / 2e-149 alpha 1,4-glycosyltransferase family protein (.1) Lus10027770 [exp] 127 / 2e-31 AT5G01250 366 / 2e-124 alpha 1,4-glycosyltransferase family protein (.1) Lus10035526 [exp] 122 / 9e-30 AT5G01250 362 / 6e-123 alpha 1,4-glycosyltransferase family protein (.1) Lus10011206 [exp] 114 / 2e-26 AT1G61050 345 / 5e-115 alpha 1,4-glycosyltransferase family protein (.1) Lus10002496 [exp] 102 / 4e-23 AT2G38150 388 / 4e-133 alpha 1,4-glycosyltransferase family protein (.1) Lus10027771 [exp] 101 / 7e-22 AT2G38150 317 / 8e-97 alpha 1,4-glycosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G122200 [exp] 602 / 0 AT4G19900 420 / 7e-138 alpha 1,4-glycosyltransferase family protein (.1) Potri.016G114200 [exp] 143 / 6e-37 AT3G09020 419 / 3e-145 alpha 1,4-glycosyltransferase family protein (.1) Potri.004G039300 [exp] 136 / 2e-34 AT1G61050 393 / 4e-134 alpha 1,4-glycosyltransferase family protein (.1) Potri.011G047700 [exp] 135 / 6e-34 AT1G61050 389 / 1e-132 alpha 1,4-glycosyltransferase family protein (.1) Potri.006G098900 [exp] 88 / 1e-19 AT2G38152 258 / 1e-85 alpha 1,4-glycosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04488 [flax] [poplar] Gly_transf_sug Glycosyltransferase sugar-binding region containing DXD motif CL0110 [flax] [poplar] PF04572 [flax] [poplar] Gb3_synth Alpha 1,4-glycosyltransferase conserved region
Representative CDS sequence Show only first row Show all	>Lus10018315 pacid=23179356 polypeptide=Lus10018315 locus=Lus10018315.g ID=Lus10018315.BGIv1.0 annot-version=v1.0 ATGCTCCGGAGCCTACGCTCTCGCCGGCGGCCACTCTACGGAGCACAAATCTGCGCCCTCGCCGCCGCTCTTCTCCTCCTCCTCTCCGTTTCTCTTCTCT ACACCCGCCTCTCTTCCACCTCTCCCCCAACCCACGGCCACCGCCACCGCATCCACCACCGCGACGGCCGACTCTCCAACCTCCGCCGGCGTACCGACGC CGATTCCGCCATCCGCACCAACCCGCTACTCACCGACTCCGCCGACGATAACACCAACAACAATCCGGACGGCGCCGACGTGCCGGACAAGATTGACGAG CTCGACAACCTAGAGGATCAGGCCGACACTGCCCCCTCCCTCGCCGAAGACGAGCAGGATAGCGAGCAGTCGCAGTCGCAGCCCCGGATCAAGTCCGCGC TATCCTCCTCGGGGTATTACGTCGACCACGTGACCGGATCCATACGGCGCGCACTCCACCGACGCTCGATCGACGATTGGGACGCCGACTACGATTCTTT CACAGTCGCCGCGGAGGACGAGAGCAAGGCGGCGATCGGGAGCGACGATGTACCGATCGACGAGGAAGTGAGGAGGAAAGTGACGGAGGTTCAGGGGATT GAGGATGCGCTTCTGTTGAAGATTGGGAAGAGAGTTTCGTCTTTGAGGGAAGGCTGGGGCGATTGGTTTGAGAAGAAGGGGGATTTCTTGAGGAGAGATA GGATGTTCAAATCAAATTTGGAGGTGTTGAATCCTGTGAACAACCCACTTTTGCAGGATCCAGATGGAGTTGGAATCACTGGATTGACAAGAGGGGATAA GGCATTGCTGAAGCTTCTGTTGAGCGAGTACAAGCGTTCTCCATTCCTTGTGAAGAAGCCTTTGAGTGTTTCTGATGCAACTCCAGAGGGGAAATTGGAG AATAAGAACGATCTCAAGCTACCTGAAAGAAGGGCTCTCCATGACAATGGCAATGACGAATCGAATGGGAAAATTGTTCTCAATGCTATCACTGAAGGTA GTAATTTGATTAACAAGAACGTATCATCCTCTGCGGAAGGTAGTAATGCAGGTGATAGTAGTTCTACTAACGTAAGCAAAATAGAAGGAATGCCCATTTT AGAGGATAAAGATGGGAGTATATATGCAGACGGGAAGAGATGGGGATATTACCCTGGTTTACATCCTCACTTGTCCTTTTCGGAGTTTGTGGATTCATTT TTCGGGAACAGCAAGTGTGAGATAAGAGTGTTCATGGTATGGAACTCACCACCTTGGATGTACAGTATTAGACACCAGAGGGGGCTGGAAAGTCTTCTGT CTCACCATAGGAATGCTTGTATTTTGGTGTTATCTGAGACAATTGATCTGAACTTCTTCAAGAACAGCTTTGTGAAAGACGGATACAAGGTTGCTGTTGC TATGCCGAACCTTGACGAATTGCTGAAAGACACGCCAACCAGTGTGTTTGCGTCGGTTTGGTCTGAATGGAGGAAGACAAAGTTCTATCCTACACATTAC AGTGAGCTTGTGAGACTTGCAGCTCTGTACAGATTTGGAGGCATTTATCTCGACTCTGACATTATAGTTACGAATCCCTTGTATTCGCTTAACAATACCA TTGGCATGGAAGATGAACGCACCGGCAGTTCTCTGAATGGGGCTGTGATGTCATTCAGACAGAAAAGTCCATTCATGCTAGAGTGCTTAAACGAATTCTA CATGACATATGACGATGCCAAATTGAGATGGAATGGAGCTGAACTTTTGACTCGAGTCTGGAACAACAATCTGAAACATGATTCATCAATTAAGCACCAG GAGCTGAATGTGCAGCCCTCTTACGTGTTCTTTCCAGTCAGTTCCCAGGACATTACCAGCTACTTCACAACACCTGCAACAGAGAACGGCAGAGCTCAGC AAGACGCCCTCTTCACAAGGATCACCAAACAGTCATTGACATTCCATTTCTGGAATAGCTTGACATCAACTCTCATCCCCGAACCGGGAAGCCTCGCAGC TCGCCTTATCAACCATTCCTGCATCCACTGCTCCGATGTGTTGTGA
AA sequence Show only first row Show all	>Lus10018315 pacid=23179356 polypeptide=Lus10018315 locus=Lus10018315.g ID=Lus10018315.BGIv1.0 annot-version=v1.0 MLRSLRSRRRPLYGAQICALAAALLLLLSVSLLYTRLSSTSPPTHGHRHRIHHRDGRLSNLRRRTDADSAIRTNPLLTDSADDNTNNNPDGADVPDKIDE LDNLEDQADTAPSLAEDEQDSEQSQSQPRIKSALSSSGYYVDHVTGSIRRALHRRSIDDWDADYDSFTVAAEDESKAAIGSDDVPIDEEVRRKVTEVQGI EDALLLKIGKRVSSLREGWGDWFEKKGDFLRRDRMFKSNLEVLNPVNNPLLQDPDGVGITGLTRGDKALLKLLLSEYKRSPFLVKKPLSVSDATPEGKLE NKNDLKLPERRALHDNGNDESNGKIVLNAITEGSNLINKNVSSSAEGSNAGDSSSTNVSKIEGMPILEDKDGSIYADGKRWGYYPGLHPHLSFSEFVDSF FGNSKCEIRVFMVWNSPPWMYSIRHQRGLESLLSHHRNACILVLSETIDLNFFKNSFVKDGYKVAVAMPNLDELLKDTPTSVFASVWSEWRKTKFYPTHY SELVRLAALYRFGGIYLDSDIIVTNPLYSLNNTIGMEDERTGSSLNGAVMSFRQKSPFMLECLNEFYMTYDDAKLRWNGAELLTRVWNNNLKHDSSIKHQ ELNVQPSYVFFPVSSQDITSYFTTPATENGRAQQDALFTRITKQSLTFHFWNSLTSTLIPEPGSLAARLINHSCIHCSDVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10018315 [exp]	0	1
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	2.2	0.9335
AT1G12500			Nucleotide-sugar transporter f...		Lus10007029 [exp]	3.2	0.8990
AT5G52540			Protein of unknown function (D...		Lus10039273 [exp]	3.3	0.8968
AT2G31440			unknown protein		Lus10025574 [exp]	3.5	0.8955
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10039054 [exp]	3.5	0.9142
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10013506 [exp]	4.2	0.9308
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10016640 [exp]	4.6	0.9033
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10032649 [exp]	5.9	0.9166
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037430 [exp]	6.2	0.8870
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032189 [exp]	6.5	0.9193

Compare expression of checked genes

Lus10018315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.