Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34320 521 / 8e-178 Protein of unknown function (DUF668) (.1) AT5G08660 493 / 3e-167 Protein of unknown function (DUF668) (.1) AT1G30755 380 / 2e-123 Protein of unknown function (DUF668) (.1) AT3G23160 86 / 2e-17 Protein of unknown function (DUF668) (.1) AT5G51670 84 / 6e-17 Protein of unknown function (DUF668) (.1) AT5G04550 76 / 4e-14 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017136 [exp] 1102 / 0 AT1G34320 570 / 0.0 Protein of unknown function (DUF668) (.1) Lus10006049 [exp] 513 / 8e-175 AT1G34320 919 / 0.0 Protein of unknown function (DUF668) (.1) Lus10028708 [exp] 434 / 1e-144 AT1G34320 827 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017260 [exp] 433 / 6e-144 AT1G30755 567 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017259 [exp] 389 / 2e-128 AT1G30755 484 / 3e-166 Protein of unknown function (DUF668) (.1) Lus10013554 [exp] 310 / 2e-98 AT1G30755 416 / 4e-140 Protein of unknown function (DUF668) (.1) Lus10028839 [exp] 87 / 8e-18 AT5G04550 282 / 2e-89 Protein of unknown function (DUF668) (.1) Lus10031691 [exp] 82 / 5e-16 AT5G51670 452 / 2e-156 Protein of unknown function (DUF668) (.1) Lus10021210 [exp] 82 / 8e-16 AT3G23160 659 / 0.0 Protein of unknown function (DUF668) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001500 [exp] 597 / 0 AT1G34320 591 / 0.0 Protein of unknown function (DUF668) (.1) Potri.001G305800 [exp] 565 / 0 AT1G34320 593 / 0.0 Protein of unknown function (DUF668) (.1) Potri.013G115300 [exp] 559 / 0 AT1G34320 889 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G085900 [exp] 555 / 0 AT1G34320 908 / 0.0 Protein of unknown function (DUF668) (.1) Potri.005G240300 [exp] 442 / 1e-147 AT1G30755 588 / 0.0 Protein of unknown function (DUF668) (.1) Potri.002G021400 [exp] 427 / 4e-142 AT1G30755 568 / 0.0 Protein of unknown function (DUF668) (.1) Potri.012G129900 [exp] 122 / 2e-29 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.015G131800 [exp] 99 / 8e-22 AT5G51670 442 / 1e-152 Protein of unknown function (DUF668) (.1) Potri.008G164700 [exp] 84 / 9e-17 AT3G23160 661 / 0.0 Protein of unknown function (DUF668) (.1) Potri.006G117000 [exp] 81 / 9e-16 AT5G04550 356 / 8e-116 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11961 [flax] [poplar] DUF3475 Domain of unknown function (DUF3475) PF05003 [flax] [poplar] DUF668 Protein of unknown function (DUF668)
Representative CDS sequence Show only first row Show all	>Lus10018317 pacid=23179338 polypeptide=Lus10018317 locus=Lus10018317.g ID=Lus10018317.BGIv1.0 annot-version=v1.0 ATGGGAGGTCGTAGTTCGAAGAACGGTAAAGCGGCTTCTTCAGTTCTCAATTCCAAGCAGAATGGCCATAATCGCTACTATAACAACAAGCAGTCTACTA GCGAAAGTGGCGGCGTATCAATTCACAATCTAAATGGTTCAAGTACCACGAAGCAGCTGGAGCTGCAACAGGGAATGGATCAACTCCAGAACGAGTCATT TCCACATTCTAGCTCTGTTGCTAATGGTAATAAGTCAGGCGTTGATATTTACGACGGGATTCCGCTTTATTCTTCTTCGGAATCGAAATCTGCTCGTTCT AGGCAGGGGGCTGTTTCCAAGGTTTCAGGTGTCAGTTCACGTTTGGGTAGAGCTGGTTCAGTCGGGCTGGGAAAAGCAGTGGAAGTATTGGACACTCTTG GGAGTAGCATGACGAATTTGAACCCTAACGCTGGATTCGCCTCTTCTGTCACGACCAAAGGCAATGAGCTTGGAATCTTAGCTTTGGAGGTGGCTAACAC TATTGTGAAAGGCTACAACCTTATGCAATCCCTTTCCAAAAGAAATATTAAACGCCTAAAAGAAGGGGTGTTCCCGTCAGAAGGCATCCAAAACTTAGTT TCAAACGATACGGATGAACTCTTGAGGATTGTTGCTGCTGACAAAAGGAATGAGTTCAAGATATTCTCAGGTGAAGTATTCCGTTTCGGGAATCGGTGTA AAGATCCTCAGTGGCACAACTTGGATCGTTATTTTGAGAAGATTAGCAACGAGTTCGCTCCTCAAAGGCAGTCGAAAGAAGAGGCAGAATCAGTTATGGA GGTTTTGATGATTTTGGTTCAGAATACAGCAGAATTATACCAAGAGTTGCAAGTGCTCGACAAAATTGACCAAGAGTATCACCAAAAACATAGCGAGGAT GATAATTCAGGGAAAGGTCGGAAAGGCAAAGGCTTAGCGATCTTAAAGGCAGAATTGAAAGGCCAAAAGAAGGAAGTACGAAACCTGAAGAAAAAATCAC TTTGGTCCAGAAGTGTAGAAGAGTATAAACAAAATATTTGGCCTTGGAGTGACTTTCCAATTGCCTCACAGGTGATGGGGAAACTTGTAGATATTGTCCG TTTTTCGCTCTTGGAGATCAACGAAACCTTTGGCAGTGAAGATAACAGTAAATACGTCAATGCATCTTTGAGACTGGGACCTGTTGGGCTGTCCTTGCAT TATGCAAACATGATTTTACAAATTGATGATATCGTGGCACAATCGAGTAACTTGCCTCCAAACGCAAGAAATGGATTGTACCAGAGTCTGCCACCAAATA TAAAGTTGGCATTGCGTTCTAGATTACCGTCGTTTGAAGTCAAAGAAGAGCTTAGCGTCACGGAGATGAAAGATGAGATGGAAAAGACTCTAGCGTGGCT TGTTCCCATGTCGACTAACACAGCCAAAGATCACCATGGTTTTGGTTGGGTTGGAGAATGGGCAAATACAGGGCCGGACGGAAGCCGCAGGAGCGTAGCG GGGAATGTGGATTTCATAAGGATGGAGTCTCTGCATCACGCGGACAAGGAGAAAACAGAAGCCTACATTCTTGAACTGCTATTGTGGTTACATCATCTAG TGAGAAAGTCAAAGACCCGTAATAACGATTTAAAAAGCAAGTCAACGTTATCTCCCACAACGCCACCATCTGATGTCCAGAAGCCGTCGGGCACAGAGTC TGCTATCACCATTGAAGAGCAGGATACCGTGGAAGATGCGAGTAAGAACGATGATGGCGAGAGCCTGGAAATGAAGGAGGAAGAGGACATAGTTGCACAG GAATCTGTCGAAGGAAAGCAGGACGAGAAAGTGAGCGAGTTCCCTGAGCTGTCTGATCCGGACATCACAATTACAAATTTGACCAAGACAAAGCTAGAGA ACCTTGCTACAGGCGCTGCAGCAGGAGGCATTCTAAGGAACTCTGAGGGGGGATTTGTGAGGCTGCCTTTGCAGCGAAGCTGA
AA sequence Show only first row Show all	>Lus10018317 pacid=23179338 polypeptide=Lus10018317 locus=Lus10018317.g ID=Lus10018317.BGIv1.0 annot-version=v1.0 MGGRSSKNGKAASSVLNSKQNGHNRYYNNKQSTSESGGVSIHNLNGSSTTKQLELQQGMDQLQNESFPHSSSVANGNKSGVDIYDGIPLYSSSESKSARS RQGAVSKVSGVSSRLGRAGSVGLGKAVEVLDTLGSSMTNLNPNAGFASSVTTKGNELGILALEVANTIVKGYNLMQSLSKRNIKRLKEGVFPSEGIQNLV SNDTDELLRIVAADKRNEFKIFSGEVFRFGNRCKDPQWHNLDRYFEKISNEFAPQRQSKEEAESVMEVLMILVQNTAELYQELQVLDKIDQEYHQKHSED DNSGKGRKGKGLAILKAELKGQKKEVRNLKKKSLWSRSVEEYKQNIWPWSDFPIASQVMGKLVDIVRFSLLEINETFGSEDNSKYVNASLRLGPVGLSLH YANMILQIDDIVAQSSNLPPNARNGLYQSLPPNIKLALRSRLPSFEVKEELSVTEMKDEMEKTLAWLVPMSTNTAKDHHGFGWVGEWANTGPDGSRRSVA GNVDFIRMESLHHADKEKTEAYILELLLWLHHLVRKSKTRNNDLKSKSTLSPTTPPSDVQKPSGTESAITIEEQDTVEDASKNDDGESLEMKEEEDIVAQ ESVEGKQDEKVSEFPELSDPDITITNLTKTKLENLATGAAAGGILRNSEGGFVRLPLQRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34320			Protein of unknown function (D...		Lus10018317 [exp]	0	1
AT4G18270		ATTRANS11	ARABIDOPSIS THALIANA TRANSLOCA...		Lus10023316 [exp]	1.4	0.9389
AT5G49760			Leucine-rich repeat protein ki...		Lus10007587 [exp]	4.5	0.9383
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	4.6	0.9489
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10020908 [exp]	7.5	0.9384
AT4G12790			P-loop containing nucleoside t...		Lus10041086 [exp]	8.8	0.9283
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10021321 [exp]	9.4	0.9348
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10014075 [exp]	10.5	0.9299
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10037268 [exp]	13.2	0.9355
AT5G18150			Methyltransferase-related prot...		Lus10005698 [exp]	13.9	0.9361
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10024270 [exp]	14.7	0.9157

Compare expression of checked genes

Lus10018317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.