Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35130 784 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G16470 426 / 5e-145 PAB1 proteasome subunit PAB1 (.1.2) AT1G79210 422 / 9e-144 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT2G18940 198 / 4e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 194 / 7e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04760 186 / 6e-50 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62930 184 / 2e-49 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 184 / 5e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 182 / 8e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 179 / 5e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017134 [exp] 1161 / 0 AT2G35130 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017135 [exp] 452 / 2e-155 AT1G16470 454 / 1e-164 proteasome subunit PAB1 (.1.2) Lus10036210 [exp] 442 / 3e-151 AT1G16470 450 / 3e-163 proteasome subunit PAB1 (.1.2) Lus10002107 [exp] 214 / 7e-59 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 212 / 1e-57 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015530 [exp] 203 / 1e-54 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 202 / 2e-54 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006962 [exp] 194 / 1e-51 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025473 [exp] 191 / 1e-50 AT2G18940 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G123600 [exp] 879 / 0 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.012G123550 [exp] 438 / 6e-150 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.015G122400 [exp] 438 / 6e-150 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.004G074700 [exp] 204 / 3e-57 AT1G62930 481 / 1e-164 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 202 / 1e-55 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G092100 [exp] 199 / 2e-53 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 196 / 6e-53 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G074500 [exp] 193 / 1e-52 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G166200 [exp] 196 / 2e-52 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 192 / 5e-52 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit CL0052 [flax] [poplar] NTN PF10584 [flax] [poplar] Proteasome_A_N Proteasome subunit A N-terminal signature CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10018318 pacid=23179286 polypeptide=Lus10018318 locus=Lus10018318.g ID=Lus10018318.BGIv1.0 annot-version=v1.0 ATGGGCGATTCTCAGTACTCGTTTTCGCTCACCACCTTCAGTCCTTCAGGGAAGCTAGTTCAGATCGAGCACGCCTTAACGGCTGTGGGTTCCGGCCAAA CTTCTCTGGGAATCAAAGCTGCGAATGGGGTTGTTATTGCGACTGAGAAAAAGCTACCATCCATTCTAGTCGATGAAGGATCTGTTCAGAAAATACAATG TCTAACTCCAAATATTGGAGTTGTATACAGTGGCATGGGACCTGATTTTCGAGTTTTGGTCCGGAAAAGCAGGAAGCAGGCTGAACAGTATCACAAACTA TATAAGGAAGCAATACCGGTTACACAGCTTGTGAGGGAAACTGCTGCTGTCATGCAGGAGTTTACTCAGTCTGGTGGTGTGAGACCTTTTGGTGTATCTC TCCTGGTTGCTGGTTTCGATGACAAAGGTCCACAATTGTATCAGGTGGATCCTTCTGGTTCATATTTTTCATGGAAGGCCTCTGCAATGGGGAAGAATGT CTCAAATGCTAAAACATTTCTTGAGAAGAGGTATACGGAGGATATGGAACTTGATGATGCCGTACACACTGCTATTCTAACATTGAAGGAAGGTTTTGAG GGACAGATCTCAGGAAAGAACATTGAGATTGGTATAATTGGCGCAGACAAGACATTCCGGTTGAAAGTTTTATACATCCTTCATTATGCATTCATCATTC AACAACCAGCAGAGCGCTTCTCCTATGCCAGCAAGTTTAGATGCAAAGCCAAGAAGTCTGGCAATGCTAACGGGAGTACTGCTGAGAAGAGCAGACGTGA AAGCCTCCATCTTGATAAACATGGAAAATGGCGTAGCTTCGCCCCGAGAAAGGTCTCGAGGAAAAGATGTGGTTCTTTAAGGGGAAAAGGATGGAAGTAT GGTTCAGGATTCGTGGATGGAATCTTCCCCGTGATGAGTCCAACTGCTCAGCAGATTCTACAACTTGCGCAGGAGGAAGGAGTTGCAGACAACGCTATTT GGAGTGCTCTTGATAATCTGCTTCCTACTAACGATACTTGGGATGATCTTCTGAACGTGGCTGTGCAGCTCCGTTTAAACAAACAATGGCATCCAATTGT CTTGATATGTCAATGGATGCTGTACCGGAGCCGCTTCAAGCCGGATGTTATATGCTACAACTTGCTCATAGAAGCATATGGGCAGAAATCACAGTACAAA AAGGCCGAATCTTTGTACTTTGAGCTGCTCGATGCCAGGTGCGTGCCTACGGAACACACTTACGCACTTCTCATCAAGGCGTACTGCAATGTCGGCCTTG TCGACAAGGCTGAAGCCATCTTTGCTGAGATGAAAAAGTATGGCCTTCCATCAAGTGCGATTGTGTACAATGCTTACATCGACGGGCTCATGAAGGCCGG AAACTCAGAAAGAGCAGTGGAGATATATCAGAGGATGCGAAGAGATAACTGCCAACCTTCTACTGAGACCTACACACTGATGATCAACTTATATGGAAAG GCTAGGCGTTCTTACATGGGGCTCAAGCTGTTCAATGAAATGAAAAGCCAGAGGTGCAAGCCAAACATCTGCACATTCACAGCTCTCATCAACGGGTTTG CGAGGGAAGGCCAATGCGAGAAGGCAGAGGAGATATTCGAGCAGCTTCAAGCAGACGGCTTCGAGCCTGATGTTTACGCTTACAATGCTCTCATGGAGGC CTACAGCCGAGCAGGATATGCTTATGGAGCAGCTGAAGTTTTCTCCCTCATGCAGCACATGGGATGTGAACCTGATAGAGCTTCATTCAACATCATGGTG GATGCATATGGCAGAGCTGGACTTCATCATGAAGCACAAGCAGTATTTGAAGACATGAAGCAACTAGGAATGACACCAACAATGAAGTCCCACATGCTCC TCCTCTCCGCACACTCAAAATCCGGAAATGTAGCCAAATGCGAGGAAATCGTGAACCAGATGCACGAATCCGGTATAGAACCGGACACATTCGTCCTCAA CAGCATGCTGAACCTCTACGGGAAGCAAGGCCATTTCGAGAAGATGGAACAAACTCTGGATGCAATGAACAAAGGACCATACGCACCCGACATCAGCACA TACAACATCCTGATCAACATCTACGGCAGGGCCGGATTCTTCGACAGAATGGAGAGCGTGTTCGGATCGCTCCCTGGCTTGAACCTGAACCCTGATGTGG TTACTTGGACGTCAAGGCTTGGTGCTTACTCCAGGAAGAAACTGTACGGAAAGTGCTTGGAGATATTTGAGGAAATGATTGATGCTGGATGCCACCCTGA TGGTGGTACTGCTAAAGTTCTTCTGTCAGCTTGTTCTAGTGATGATCAGATAGAGCAGGTTACCACTGTTATTAGAACAATGCATAAAAGTATCTCTACT GTTCTTCCTCTCTGA
AA sequence Show only first row Show all	>Lus10018318 pacid=23179286 polypeptide=Lus10018318 locus=Lus10018318.g ID=Lus10018318.BGIv1.0 annot-version=v1.0 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDEGSVQKIQCLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHKL YKEAIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGFDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAVHTAILTLKEGFE GQISGKNIEIGIIGADKTFRLKVLYILHYAFIIQQPAERFSYASKFRCKAKKSGNANGSTAEKSRRESLHLDKHGKWRSFAPRKVSRKRCGSLRGKGWKY GSGFVDGIFPVMSPTAQQILQLAQEEGVADNAIWSALDNLLPTNDTWDDLLNVAVQLRLNKQWHPIVLICQWMLYRSRFKPDVICYNLLIEAYGQKSQYK KAESLYFELLDARCVPTEHTYALLIKAYCNVGLVDKAEAIFAEMKKYGLPSSAIVYNAYIDGLMKAGNSERAVEIYQRMRRDNCQPSTETYTLMINLYGK ARRSYMGLKLFNEMKSQRCKPNICTFTALINGFAREGQCEKAEEIFEQLQADGFEPDVYAYNALMEAYSRAGYAYGAAEVFSLMQHMGCEPDRASFNIMV DAYGRAGLHHEAQAVFEDMKQLGMTPTMKSHMLLLSAHSKSGNVAKCEEIVNQMHESGIEPDTFVLNSMLNLYGKQGHFEKMEQTLDAMNKGPYAPDIST YNILINIYGRAGFFDRMESVFGSLPGLNLNPDVVTWTSRLGAYSRKKLYGKCLEIFEEMIDAGCHPDGGTAKVLLSACSSDDQIEQVTTVIRTMHKSIST VLPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35130			Tetratricopeptide repeat (TPR)...		Lus10018318 [exp]	0	1
AT1G63610			unknown protein		Lus10016008 [exp]	2.4	0.8061
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038308 [exp]	4.9	0.7473
AT5G45780			Leucine-rich repeat protein ki...		Lus10007292 [exp]	7.4	0.7416
AT1G67590			Remorin family protein (.1.2)		Lus10036996 [exp]	8.9	0.7638
AT3G58140			phenylalanyl-tRNA synthetase c...		Lus10028547 [exp]	10.1	0.7173
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10037926 [exp]	11.0	0.7308
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10041541 [exp]	11.7	0.7604
AT1G05430			unknown protein		Lus10006108 [exp]	13.5	0.7322
AT1G58280			Phosphoglycerate mutase family...		Lus10032821 [exp]	15.9	0.7248
AT5G66530			Galactose mutarotase-like supe...		Lus10041758 [exp]	16.5	0.7185

Compare expression of checked genes

Lus10018318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.