Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35120 244 / 2e-84 Single hybrid motif superfamily protein (.1) AT1G32470 178 / 6e-58 Single hybrid motif superfamily protein (.1) AT2G35370 176 / 5e-57 GDCH glycine decarboxylase complex H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017133 [exp] 218 / 2e-74 AT2G35120 162 / 1e-52 Single hybrid motif superfamily protein (.1) Lus10030979 [exp] 182 / 2e-59 AT1G32470 254 / 4e-88 Single hybrid motif superfamily protein (.1) Lus10035374 [exp] 178 / 4e-58 AT1G32470 254 / 6e-88 Single hybrid motif superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G122500 [exp] 271 / 7e-95 AT2G35120 224 / 2e-76 Single hybrid motif superfamily protein (.1) Potri.012G123700 [exp] 265 / 2e-92 AT2G35120 217 / 2e-73 Single hybrid motif superfamily protein (.1) Potri.001G144800 [exp] 186 / 5e-61 AT1G32470 255 / 3e-88 Single hybrid motif superfamily protein (.1) Potri.003G089300 [exp] 184 / 3e-60 AT1G32470 260 / 3e-90 Single hybrid motif superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF01597 [flax] [poplar] GCV_H Glycine cleavage H-protein
Representative CDS sequence Show only first row Show all	>Lus10018319 pacid=23179351 polypeptide=Lus10018319 locus=Lus10018319.g ID=Lus10018319.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCGCGGTTGTTGTGGGCTTCCAAGGCCGCTTCTTTCCTCAGGATCTCCGTTCCCCACAGGGGATTCGCTTCCGTTATAAAGGAGCTGAAGT ATTTGGACAGTCATGAGTGGGTGAAGGCTGATGGTAATGCTGCCATCGTCGGGATAACCGATCATGCTCAAGATCATCTAGGGGACGTTGTGTATGTAGA ACTACCGGAGATTGGCACTGAAGTTACCCAGGGAAATGGTTTTGGGGCAGTTGAAAGCGTCAAGGCTACAAGTGATATCAACTCTCCAGTTTCCGGCAAA GTAGTGGAAGTAAATGAGGAGCTGAACAGTAGCCCCGGTTTGGTGAATTCGAGCCCGTATGAGAAAGGGTGGATCATGAAGGTGGAAATGAAGGATGCTT CTGAGCTGGAGAGCTTGAAGGATTCAGACAGCTACTCCAAGTTCTGCGATGAAGAAGATGCCAAGCATTAG
AA sequence Show only first row Show all	>Lus10018319 pacid=23179351 polypeptide=Lus10018319 locus=Lus10018319.g ID=Lus10018319.BGIv1.0 annot-version=v1.0 MASSRLLWASKAASFLRISVPHRGFASVIKELKYLDSHEWVKADGNAAIVGITDHAQDHLGDVVYVELPEIGTEVTQGNGFGAVESVKATSDINSPVSGK VVEVNEELNSSPGLVNSSPYEKGWIMKVEMKDASELESLKDSDSYSKFCDEEDAKH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35120			Single hybrid motif superfamil...		Lus10018319 [exp]	0	1
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10014129 [exp]	1.7	0.9090
AT2G45290			Transketolase (.1)		Lus10000789 [exp]	1.7	0.9333
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	3.2	0.8892
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10017404 [exp]	3.2	0.9324
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10038691 [exp]	3.5	0.8866
AT3G24100			Uncharacterised protein family...		Lus10016668 [exp]	4.2	0.8561
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10037025 [exp]	4.9	0.8475
AT1G49420			Heavy metal transport/detoxifi...		Lus10038786 [exp]	6.2	0.8305
AT2G45290			Transketolase (.1)		Lus10030283 [exp]	7.7	0.8980
AT5G62440			Protein of unknown function (D...		Lus10002053 [exp]	7.9	0.8514

Compare expression of checked genes

Lus10018319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.