Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50120 206 / 9e-60 Plant protein of unknown function (DUF247) (.1) AT3G50170 199 / 4e-57 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50150 194 / 1e-55 Plant protein of unknown function (DUF247) (.1) AT3G50140 188 / 5e-53 Plant protein of unknown function (DUF247) (.1) AT3G50130 181 / 2e-50 Plant protein of unknown function (DUF247) (.1) AT3G50160 180 / 2e-50 Plant protein of unknown function (DUF247) (.1) AT2G36430 178 / 3e-50 Plant protein of unknown function (DUF247) (.1) AT3G50180 179 / 2e-49 Plant protein of unknown function (DUF247) (.1) AT3G50190 171 / 2e-47 Plant protein of unknown function (DUF247) (.1) AT5G22540 169 / 9e-47 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017132 [exp] 766 / 0 AT3G50120 157 / 6e-42 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 221 / 1e-65 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 173 / 5e-48 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 166 / 2e-45 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 164 / 2e-44 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 156 / 5e-42 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 152 / 1e-40 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10035569 [exp] 152 / 2e-40 AT2G36430 427 / 2e-147 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 148 / 4e-39 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G047700 [exp] 204 / 6e-59 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.004G187100 [exp] 179 / 2e-50 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.007G013800 [exp] 170 / 3e-47 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.003G159300 [exp] 170 / 5e-47 AT3G50120 268 / 6e-84 Plant protein of unknown function (DUF247) (.1) Potri.005G116100 [exp] 167 / 4e-46 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.001G071400 [exp] 166 / 2e-45 AT3G50120 292 / 3e-93 Plant protein of unknown function (DUF247) (.1) Potri.001G071300 [exp] 159 / 6e-43 AT3G50120 293 / 7e-94 Plant protein of unknown function (DUF247) (.1) Potri.010G144200 [exp] 155 / 4e-42 AT3G50140 245 / 7e-76 Plant protein of unknown function (DUF247) (.1) Potri.003G159400 [exp] 154 / 2e-41 AT3G50120 294 / 1e-94 Plant protein of unknown function (DUF247) (.1) Potri.001G333000 [exp] 149 / 2e-39 AT3G50160 237 / 8e-73 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10018320 pacid=23179403 polypeptide=Lus10018320 locus=Lus10018320.g ID=Lus10018320.BGIv1.0 annot-version=v1.0 ATGAGCGCGGGAAGGAAGTCCCTCAGCCTTGCCCAAGCTCTGCTCTCTTCATCATCCACCAAGCGGAATCCATGGCGTGTTCGAACATTCTGCAGCTCCT CCGGTGGCAGCGGCTCAGCTTCCACTACTAATAATAACTGGAAATCTGCCCTCCAGGAACAACTACGGAACTCAAGCCCGGAAGAAAGCAGCTCCGTCTC AATCTACAGAGTCCCTTTCACAATGCGTCGAGTGGAGCCCACTGCCTACACTCCCAACCTCGTCTCCGTCGGCCCTTACCACCACGGCGATCCTCCCCTT CAGGAAACCGGCAACCAACTTAAGTGGAGGTTCGTCAGCCGTCTTTTTTCCTCCCCCAACCCCAGCCACCGACCTGTAGAGCTGGACAACGTCCTGGAAT CTCTGGAAACGCTGGAGGACGAGACGAGGAGATGCTACGCCGACGACGTCAAGCTCGACGGAGGAGAGTTCGTCAGGATGATGCTACTGGACGGTTGCTT TGTCGTCGAGCTGCTTAGGGAATTGGAGAGCTATGGATTCAGGAACGGATCTCCATTGATTCAGAAATGGATGCTTCCACATCTCCGGAGAGACCTCATC ATGCTGGAGAACCAGCTCCCTCTCTCCGTTCTTCAGACGCTTTTCCGATTAACAAGCGGGAACACGACGATGAGCTCCTCCGAGGAAAAACAGTCCAAAG ATTCCTTCCTCAAGCTCGCGCTTCAATTCTTCAGCCCTCTTCTGCAGAGGGACTCCTCCAGGTCCGTTTCGGAAATTTGGTCCAAATTCGAGGGCCGAAC CGTCAGAGAAAATCACCACTTCCTCGATTTCTTCCGCTCCAGAATCCTCCCAATAGAAGCAACGGAGGCAGAAGCAGCAGCAACAACCTCCCACAGTCCG TGTCAGGGTCAGAAACACCCGTACCCGACCCAGTTCCGTCACGAGAAAGTAAACAATTTCCAACAACAGGAGCCAAACATGATGCGATCAGTGAAGGAGC TAGCGAAGGCGAGGATGTTCGTAGGCAAACGGAACAACAACCGGCCGTTAGACGTGCAATCGGACGGGAAGCGGCTAGTGATCCCTCCGATCTACTTGGA GGACGCGAGGGGGACGGCGTTCAGGAACATGGTGGCGTACGAGCAGTGCCACGGAGGATGCAAGCCGCAGGTGACGGCGTACGTGTTCTTCCTTAACGGC CTGATCAACTGCGAGGAGGACGTGGCGCTGCTGGCAAGGAAGGGGATCGTGCACCATTCGCTGGGCAGCAACCGTGAGGCTGCGGAACTGGTCAACGGTC TGACCAAGGAGGTTGTCTGCGGCGAGGATTCGTCGTCGTCGTACCTTCAGAAGGTGCTGGCGGTGGCGAACTCGTACATGTCGACTACTTACGCGGCGAT GGGGGCGCCGCTGGTGGATAAGTACTTTGGAAATTGGGCGATTGCTCTGTCTTCGCTCGGGTTTGTTTTGTATGAAGCTCCGAGTTTCTTGGACCGGGTC CGGTTGTTGACGGAGACTTTCTCCGGGGATGAGGACGATGACATGCCGCGAAATCAATGA
AA sequence Show only first row Show all	>Lus10018320 pacid=23179403 polypeptide=Lus10018320 locus=Lus10018320.g ID=Lus10018320.BGIv1.0 annot-version=v1.0 MSAGRKSLSLAQALLSSSSTKRNPWRVRTFCSSSGGSGSASTTNNNWKSALQEQLRNSSPEESSSVSIYRVPFTMRRVEPTAYTPNLVSVGPYHHGDPPL QETGNQLKWRFVSRLFSSPNPSHRPVELDNVLESLETLEDETRRCYADDVKLDGGEFVRMMLLDGCFVVELLRELESYGFRNGSPLIQKWMLPHLRRDLI MLENQLPLSVLQTLFRLTSGNTTMSSSEEKQSKDSFLKLALQFFSPLLQRDSSRSVSEIWSKFEGRTVRENHHFLDFFRSRILPIEATEAEAAATTSHSP CQGQKHPYPTQFRHEKVNNFQQQEPNMMRSVKELAKARMFVGKRNNNRPLDVQSDGKRLVIPPIYLEDARGTAFRNMVAYEQCHGGCKPQVTAYVFFLNG LINCEEDVALLARKGIVHHSLGSNREAAELVNGLTKEVVCGEDSSSSYLQKVLAVANSYMSTTYAAMGAPLVDKYFGNWAIALSSLGFVLYEAPSFLDRV RLLTETFSGDEDDDMPRNQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50120			Plant protein of unknown funct...		Lus10018320 [exp]	0	1
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10034212 [exp]	15.0	0.6473
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Lus10034840 [exp]	21.0	0.6136
AT1G18070			Translation elongation factor ...		Lus10009038 [exp]	23.2	0.5964
AT5G65020		ANNAT2	annexin 2 (.1.2)		Lus10041696 [exp]	34.5	0.5854
AT4G31340			myosin heavy chain-related (.1...		Lus10026967 [exp]	41.4	0.5795
					Lus10005647 [exp]	46.1	0.5833
AT3G11010		AtRLP34	receptor like protein 34 (.1)		Lus10002752 [exp]	54.6	0.5003
AT2G22180			hydroxyproline-rich glycoprote...		Lus10016800 [exp]	71.0	0.5722
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Lus10040393 [exp]	99.9	0.5522
					Lus10002467 [exp]	119.4	0.5208

Compare expression of checked genes

Lus10018320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.