Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05010 666 / 0 clathrin adaptor complexes medium subunit family protein (.1.2) AT5G40855 68 / 4e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017131 [exp] 919 / 0 AT5G05010 759 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G125400 [exp] 750 / 0 AT5G05010 774 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2) Potri.012G125500 [exp] 730 / 0 AT5G05010 740 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2) Potri.001G293150 [exp] 87 / 2e-20 AT5G05010 68 / 1e-14 clathrin adaptor complexes medium subunit family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0448 [flax] [poplar] Cargo_bd_muHD PF00928 [flax] [poplar] Adap_comp_sub Adaptor complexes medium subunit family
Representative CDS sequence Show only first row Show all	>Lus10018321 pacid=23179352 polypeptide=Lus10018321 locus=Lus10018321.g ID=Lus10018321.BGIv1.0 annot-version=v1.0 ATGCATTGCGATCGGACGCCCTTAAATTCGTACTTTCTTGTCTCTAGGCAGTTTGTGGACATGACCCGTATAAGGATTGAAGGTCTTCTTGCTGCATTCC CAAAGTTGGTGGGCACGGGAAAGCAGCATACATATGTGGAGACCGAGAATGTACGCTATGTTTACCAGCCAATAGAGCTTATGTACTTATTGCTTGTGAC AAATAAACAAAGCAATATTCTTGAAGATTTGGAAACTCTTCGGCTCCTCTCTAAGCTTGTACCTGAGTATGCTATGTCTCTTGATGAGGAGGGTATTACC AAGACAGCCTTTGAGTTGATTTTTGCTTTTGATGAGGTCATCTCCCTTGGGCACAAGGAAAATGTTACTGTTGCACAGGTTAAGCAATACTGTGAGATGG AAAGTCATGAAGAGAAATTGCACAAACTGGTACTGCAGAGTAAGATTAATGAAACAAAGGACGTGATGAAGCGTAAAGCTAGTGAAATTGACAAAAGCAA GCTTGAGAAAAATAGGGGTGAAAAGGGTGGTTTTATGTCATTGCAATCAATGGGTTCTGGAGGAAGAATCGAGAGTAGCTTCAATGATATGAATATTTCT AGCAGTGGAAGTGGTTTTGGAAGTGGTTCTGGGTTTGGGTTGACCACTGATGTTGACTCGTTCTCCAGCAAGTCAAAAGCTCGTCCATCTTCAGCAGCTA CTGCGCCTGCTAAAGGTCTTGGCATGAAGCTTGGTAAAACTCAAAGAACAAACCAGTTCTTAGAGTCCTTGAAGGCAGAAGGTGAAGTCATCATCGAAGA TGTGCAACCAAGAGCAGGCCAATCAGGAGCTGCTGCTGCACCACCAACTGATCCAATCACTCTGACTGTCGAGGAGAAGCTGAACGTAACTCTAAAACGT GATGGTGGAGTGAGTAGCTTTGATGTGCAGGGGCAATTGACACTTCAGGTCCTCAACCAGGACGATGGGCTGATCCAAGTTCAGATCGAAACTGGAGGGG ACCCTGGGAAGATCCAATTCAAGACTCACCCTAACATGAACAAAGAGTTATTTGCCAATGAAAATACTCTGGGCTCGAAGGACCCGAATAGGCCTTTTCC TGCTGGTACTGGTGTTGGTCTTTTGAAGTGGAGAATGAGTGGAGATGAATCTAAGGTTCCACTAACAATTAACTGCTGGCCGTCTGTGTCCGGAAATGAA ACATATGTCAGCATTGAATATGAAGCTTCAGACATGTTTGACCTCCGGAATGTGCTGATCTCGGTGCCTCTTCCAGCTCTTAGGGAGGCACCCAGTGTCA GACAGATAGATGGAGAATGGAGCGGATCAATGGAGTTTGTGGTACCCCCATCAGATTCATCAGCTTTCTTCCCCATTGCTGTCCGATTCTCAGCTGCCAA CACATTCAGTGATTTGAAGGCTGCAAGTATCATTCCACTGAAAGGTGGAGTACCTCCCAAATACTCCCAGAGGACGCAAATGATCACCGACAATTACCAA GTAGTCTGA
AA sequence Show only first row Show all	>Lus10018321 pacid=23179352 polypeptide=Lus10018321 locus=Lus10018321.g ID=Lus10018321.BGIv1.0 annot-version=v1.0 MHCDRTPLNSYFLVSRQFVDMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIELMYLLLVTNKQSNILEDLETLRLLSKLVPEYAMSLDEEGIT KTAFELIFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVLQSKINETKDVMKRKASEIDKSKLEKNRGEKGGFMSLQSMGSGGRIESSFNDMNIS SSGSGFGSGSGFGLTTDVDSFSSKSKARPSSAATAPAKGLGMKLGKTQRTNQFLESLKAEGEVIIEDVQPRAGQSGAAAAPPTDPITLTVEEKLNVTLKR DGGVSSFDVQGQLTLQVLNQDDGLIQVQIETGGDPGKIQFKTHPNMNKELFANENTLGSKDPNRPFPAGTGVGLLKWRMSGDESKVPLTINCWPSVSGNE TYVSIEYEASDMFDLRNVLISVPLPALREAPSVRQIDGEWSGSMEFVVPPSDSSAFFPIAVRFSAANTFSDLKAASIIPLKGGVPPKYSQRTQMITDNYQ VV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05010			clathrin adaptor complexes med...		Lus10018321 [exp]	0	1
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	1.4	0.9481
AT1G53290			Galactosyltransferase family p...		Lus10017943 [exp]	1.7	0.9105
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10042324 [exp]	3.3	0.8869
AT2G20840			Secretory carrier membrane pro...		Lus10039794 [exp]	3.7	0.9295
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10000903 [exp]	4.6	0.8959
AT1G30630			Coatomer epsilon subunit (.1)		Lus10003497 [exp]	4.9	0.8864
AT1G20950			Phosphofructokinase family pro...		Lus10025167 [exp]	8.5	0.8786
AT3G12110		ACT11	actin-11 (.1)		Lus10040826 [exp]	10.2	0.8942
AT5G10840			Endomembrane protein 70 protei...		Lus10026254 [exp]	10.7	0.9068
AT5G42360			Galactose oxidase/kelch repeat...		Lus10030733 [exp]	12.0	0.8624

Compare expression of checked genes

Lus10018321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.