Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31130 367 / 2e-127 unknown protein AT4G19950 362 / 1e-125 unknown protein AT5G44860 336 / 3e-115 unknown protein AT1G26650 44 / 6e-05 unknown protein AT4G16850 42 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017130 [exp] 519 / 0 AT4G19950 410 / 1e-144 unknown protein Lus10036220 [exp] 229 / 9e-75 AT5G44860 265 / 3e-89 unknown protein Lus10018940 [exp] 166 / 1e-48 AT1G31130 231 / 8e-74 unknown protein Lus10028643 [exp] 159 / 1e-45 AT1G31130 228 / 1e-72 unknown protein Lus10038358 [exp] 146 / 1e-43 AT4G19950 183 / 1e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G125600 [exp] 362 / 3e-125 AT1G31130 327 / 7e-112 unknown protein Potri.012G125800 [exp] 345 / 6e-119 AT5G44860 396 / 4e-139 unknown protein Potri.007G105600 [exp] 211 / 4e-66 AT4G19950 179 / 7e-54 unknown protein Potri.007G105700 [exp] 197 / 8e-61 AT4G19950 182 / 4e-55 unknown protein Potri.005G186200 [exp] 190 / 8e-58 AT4G19950 185 / 3e-56 unknown protein Potri.002G074200 [exp] 137 / 1e-37 AT1G31130 128 / 3e-34 unknown protein Potri.005G184600 [exp] 79 / 2e-16 AT4G19950 133 / 3e-36 unknown protein Potri.010G250300 [exp] 59 / 1e-09 AT1G31130 70 / 2e-13 unknown protein Potri.018G097900 [exp] 44 / 8e-05 AT4G16850 162 / 9e-48 unknown protein Potri.010G163400 [exp] 44 / 0.0001 AT1G26650 453 / 1e-160 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018322 pacid=23179295 polypeptide=Lus10018322 locus=Lus10018322.g ID=Lus10018322.BGIv1.0 annot-version=v1.0 ATGGACCGACCACCGGAGGAGCTCCAATTCCTCTCAGTACCGGGAATCCTAAAGCAATCAATCTCAATCCCGAAGCAATCCCCCAAAACATTCTCCCTCA TAACCCTAACCCTAATCTTCCCTCTCTCATTCGCAATCCTAGCACATTCCCTCTTCACCCACCCAATCATCGCCCAGCTCGAGAACACACCCGACCCATA CGACGACTCCGACCCGACCGTCGCCCGCTACGAGTGGACCCTCCTCATCTTCCAGTTCTGGTACTCGATCTTCCTCTTCGCATTCTCTCTCCTCTCCACC GCCGCCGTCGTCTTCACCGTCGCCTCCCTCTACACCGCCAAGCCGGTATCCTTCTCCTCCACCGCCGCCGCGATCCCCAAGCTCTTCAAGCGCCTCTTCG TCACCTTCATCTTCGTCGCCCTCCTCATGTTCCTCTACAACGCCGTCTTCCTCATCGTCCTCGTGATATTCGTCATCGTGATCGACACCTCCACCGCCGC CGATCAGAGCCCCGGCCTCATCCTGTTCGCCCTCCTAATCGTATTCGCCGTCTTCCTCGCCGTACACGTGTACATCACCGCTCTGTGGCACCTGGCCAGC GTCGTCTCCGTTTTGGAACCGGTCTACGGATTCGCCGCCATGAAAAAGAGCTACGAGCTGCTCAGGGGGAAAACAGGAGCCGCATTCGTGATGGTGTTTA TGTATCTGATGATCTGTGGGATGGTGAATACCGTTTTCGGGTCGATTGTTGTCCATGGCGGCTTGGATTACACGCTGGCGGCCCGGATTGTGGTCGGCGG GTCACTGGTTGGGGTTTTGGTGGTTATGAATCTGGTTGGATTGCTGGTTCAGAGCGTGTTTTACTATGTATGCAAGAGCTATCATAACCAAGAGATTGAT AAGATGGCATTGCATGATCAGTTGGGTGAGTATCTGGGTGAGTATGTTCCTCTCAAGAGCAACATTCAGCTGGAGAACTTGAATGTTGATACTTGA
AA sequence Show only first row Show all	>Lus10018322 pacid=23179295 polypeptide=Lus10018322 locus=Lus10018322.g ID=Lus10018322.BGIv1.0 annot-version=v1.0 MDRPPEELQFLSVPGILKQSISIPKQSPKTFSLITLTLIFPLSFAILAHSLFTHPIIAQLENTPDPYDDSDPTVARYEWTLLIFQFWYSIFLFAFSLLST AAVVFTVASLYTAKPVSFSSTAAAIPKLFKRLFVTFIFVALLMFLYNAVFLIVLVIFVIVIDTSTAADQSPGLILFALLIVFAVFLAVHVYITALWHLAS VVSVLEPVYGFAAMKKSYELLRGKTGAAFVMVFMYLMICGMVNTVFGSIVVHGGLDYTLAARIVVGGSLVGVLVVMNLVGLLVQSVFYYVCKSYHNQEID KMALHDQLGEYLGEYVPLKSNIQLENLNVDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19950			unknown protein		Lus10018322 [exp]	0	1
AT5G43390			Uncharacterised conserved prot...		Lus10021875 [exp]	6.6	0.8750
AT2G47550			Plant invertase/pectin methyle...		Lus10020680 [exp]	8.5	0.8667
AT5G51170			unknown protein		Lus10031950 [exp]	8.7	0.8337
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10019765 [exp]	8.8	0.8101
AT3G02645			Plant protein of unknown funct...		Lus10009504 [exp]	10.6	0.8337
AT2G15000			unknown protein		Lus10020971 [exp]	13.7	0.8416
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10018172 [exp]	13.8	0.8398
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10027539 [exp]	14.2	0.8707
AT4G03240		ATFH, FH	frataxin homolog (.1)		Lus10033750 [exp]	18.3	0.8622
AT2G20770		GCL2	GCR2-like 2 (.1)		Lus10033701 [exp]	19.6	0.7896

Compare expression of checked genes

Lus10018322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.