Plant FIBer expression Database

Lus10018325 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017128
[exp]
59 / 1e-10 AT5G11000 245 / 1e-78 Plant protein of unknown function (DUF868) (.1)
Lus10005342
[exp]
51 / 3e-08 AT5G11000 154 / 3e-45 Plant protein of unknown function (DUF868) (.1)
Lus10041022
[exp]
49 / 2e-07 AT5G11000 159 / 4e-47 Plant protein of unknown function (DUF868) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G261300
[exp]
41 / 0.0001 AT5G11000 295 / 3e-97 Plant protein of unknown function (DUF868) (.1)
Potri.018G021800
[exp]
40 / 0.0004 AT5G11000 278 / 2e-90 Plant protein of unknown function (DUF868) (.1)
PFAM info
Representative CDS sequence
>Lus10018325 pacid=23179393 polypeptide=Lus10018325 locus=Lus10018325.g ID=Lus10018325.BGIv1.0 annot-version=v1.0
ATGTTCAGATTCGAGGCAGAGGAAGAAGTGGAAGAGTACGGAAACGAAGACGACGGCGGGGGAGATGCGACCCCGCCGTCGGGAAAGAGCGGCGGCGGGG
AAAGTTGGAAACAGGAGAGTAATTCGCCTTGGAGGAAGGTGAAGAGGAGCTTGATGATGAAGAACACAGGGGCGAGGAGCTCGTCGTGGTCGTCGGTGTC
GATGTCGTCGGTGTCGTCGTCGATGGGGACGAATATGTCGGTAATGGAGTGGGCCAGCGTGGAAGAAAGCGAGTTGGGCTGTGGGCCTGACGGCTTCACC
TTGCTGGTTTATGCCTGGAAGAAGTACGGTGGGATTTTCCAAATTTTCCCAACTGGCCAACCGTATGTAGTTGCAACATGTCATGTCGAGTGTTCTATAG
TGTTATCGTTAATCTCGTCGATTCGATCTGATTTGATTTTACGATCTGAACCAACGTGGTCGGGGGAAATGCGAAAGGATACGCAAATCTAG
AA sequence
>Lus10018325 pacid=23179393 polypeptide=Lus10018325 locus=Lus10018325.g ID=Lus10018325.BGIv1.0 annot-version=v1.0
MFRFEAEEEVEEYGNEDDGGGDATPPSGKSGGGESWKQESNSPWRKVKRSLMMKNTGARSSSWSSVSMSSVSSSMGTNMSVMEWASVEESELGCGPDGFT
LLVYAWKKYGGIFQIFPTGQPYVVATCHVECSIVLSLISSIRSDLILRSEPTWSGEMRKDTQI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10018325
[exp]
0 1
AT3G16190 Isochorismatase family protein... Lus10006833
[exp]
3.2 0.8325
AT3G05200 ATL6 RING/U-box superfamily protein... Lus10031515
[exp]
3.5 0.8489
Lus10006569
[exp]
5.3 0.8017
AT3G45010 SCPL48 serine carboxypeptidase-like 4... Lus10037380
[exp]
6.0 0.7958
AT4G40080 ENTH/ANTH/VHS superfamily prot... Lus10023837
[exp]
9.6 0.8168
AT1G68570 Major facilitator superfamily ... Lus10034305
[exp]
12.2 0.8198
AT5G62220 ATGT18 glycosyltransferase 18 (.1) Lus10031685
[exp]
15.2 0.7948
AT3G26040 HXXXD-type acyl-transferase fa... Lus10030751
[exp]
16.9 0.7547
AT1G07710 Ankyrin repeat family protein ... Lus10024440
[exp]
17.6 0.8087
AT5G47850 CCR4 CRINKLY4 related 4 (.1) Lus10012995
[exp]
19.3 0.7614

Lus10018325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.