Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25170 293 / 1e-101 PPPDE putative thiol peptidase family protein (.1) AT2G25190 268 / 2e-91 PPPDE putative thiol peptidase family protein (.1) AT1G80690 247 / 2e-83 PPPDE putative thiol peptidase family protein (.1) AT4G31980 259 / 6e-83 unknown protein AT1G47740 228 / 4e-75 PPPDE putative thiol peptidase family protein (.1.2) AT5G47310 210 / 8e-69 PPPDE putative thiol peptidase family protein (.1) AT4G17486 205 / 5e-67 PPPDE putative thiol peptidase family protein (.1.2) AT4G25680 94 / 2e-23 PPPDE putative thiol peptidase family protein (.1) AT4G25660 93 / 5e-23 PPPDE putative thiol peptidase family protein (.1) AT3G07090 65 / 1e-12 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017127 [exp] 391 / 9e-141 AT5G25170 312 / 3e-109 PPPDE putative thiol peptidase family protein (.1) Lus10005341 [exp] 325 / 2e-114 AT5G25170 303 / 9e-106 PPPDE putative thiol peptidase family protein (.1) Lus10041021 [exp] 319 / 4e-112 AT5G25170 309 / 5e-108 PPPDE putative thiol peptidase family protein (.1) Lus10042454 [exp] 246 / 9e-83 AT1G80690 265 / 1e-89 PPPDE putative thiol peptidase family protein (.1) Lus10026215 [exp] 244 / 6e-82 AT1G80690 265 / 8e-90 PPPDE putative thiol peptidase family protein (.1) Lus10032708 [exp] 227 / 3e-75 AT1G47740 357 / 1e-125 PPPDE putative thiol peptidase family protein (.1.2) Lus10003951 [exp] 224 / 3e-74 AT1G47740 358 / 8e-126 PPPDE putative thiol peptidase family protein (.1.2) Lus10040170 [exp] 216 / 2e-71 AT4G17486 283 / 9e-98 PPPDE putative thiol peptidase family protein (.1.2) Lus10040485 [exp] 216 / 4e-71 AT1G47740 272 / 6e-92 PPPDE putative thiol peptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G261500 [exp] 301 / 1e-104 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1) Potri.018G021700 [exp] 297 / 3e-103 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.003G180400 [exp] 263 / 6e-90 AT1G80690 303 / 1e-105 PPPDE putative thiol peptidase family protein (.1) Potri.001G047800 [exp] 255 / 6e-87 AT1G80690 298 / 2e-103 PPPDE putative thiol peptidase family protein (.1) Potri.014G042300 [exp] 234 / 3e-78 AT1G47740 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1.2) Potri.002G134200 [exp] 233 / 1e-77 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.004G151200 [exp] 226 / 7e-75 AT1G47740 335 / 1e-116 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 222 / 2e-73 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 221 / 4e-73 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.003G080300 [exp] 216 / 2e-71 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10018326 pacid=23179323 polypeptide=Lus10018326 locus=Lus10018326.g ID=Lus10018326.BGIv1.0 annot-version=v1.0 ATGTTGCCGCATAAGAAGAAGAAGGCGGGTTCGGTGCCGGTTTACTTGAATGTTTATGATTTGACACCCATGAATGGCTACGCTTACTGGGTCGGCCTTG GAATCTACCACTCTGGCGTCCAAGTTCACGGAGTTGAATATGGATTTGGAGCTCATGATCATTCAACCACGGGGGTATTCGAGGTTGAACCGAAGCAGTG CCCTGGTTTCACTTTCAGGAAATCGATACTCATCGGCAGAACTGATCTCGGTACGAAAGAAGTTCGTTCGATGATGGAGCAACTGGCCAAAGAGTATTCC GGGAATGCCTACCACCTTATCACTAAGAACTGCAATCACTTCTGCAATGATGTCTGTGTCAAGCTAACTGGGAAAACCATTCCCAGCTGGGTTAACCGGC TTGCTCGATTAGGTTTTCTTTGCAACTGCGTTCTTCCAGCAGAGCTGAATGGAGCGAAAGTCCGGCAAGTAAGATCGGGGGAGAGGGTGCAGCAAGTAGA GAAGAAGAAGTTAAGGAGCCGTTCGAGTAGATTTGCATCTGCAACAACCAACACACCTACATTATCAAAAACTGCTTCAGGTTCTGCAATCAGTGGTCGT GCTGGACAGAACTTGTGA
AA sequence Show only first row Show all	>Lus10018326 pacid=23179323 polypeptide=Lus10018326 locus=Lus10018326.g ID=Lus10018326.BGIv1.0 annot-version=v1.0 MLPHKKKKAGSVPVYLNVYDLTPMNGYAYWVGLGIYHSGVQVHGVEYGFGAHDHSTTGVFEVEPKQCPGFTFRKSILIGRTDLGTKEVRSMMEQLAKEYS GNAYHLITKNCNHFCNDVCVKLTGKTIPSWVNRLARLGFLCNCVLPAELNGAKVRQVRSGERVQQVEKKKLRSRSSRFASATTNTPTLSKTASGSAISGR AGQNL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25170			PPPDE putative thiol peptidase...		Lus10018326 [exp]	0	1
AT3G03750		SUVR3, SDG20	SET domain protein 20 (.1.2)		Lus10003864 [exp]	5.3	0.7528
AT1G64280		SAI1, NIM1, NPR...	SALICYLIC ACID INSENSITIVE 1, ...		Lus10018756 [exp]	8.2	0.7793
AT4G39100		SHL1	short life, PHD finger family ...		Lus10028801 [exp]	8.7	0.7483
AT5G25170			PPPDE putative thiol peptidase...		Lus10017127 [exp]	9.7	0.6910
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10010517 [exp]	13.4	0.7770
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10015639 [exp]	13.5	0.7252
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10041997 [exp]	22.8	0.7448
AT5G12410			THUMP domain-containing protei...		Lus10005018 [exp]	22.8	0.7528
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10023516 [exp]	24.0	0.7438
AT5G52030			TraB family protein (.1.2)		Lus10015005 [exp]	24.7	0.7157

Compare expression of checked genes

Lus10018326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.